View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_low_14 (Length: 395)
Name: NF19070_low_14
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 185 - 378
Target Start/End: Original strand, 47252849 - 47253042
Alignment:
| Q |
185 |
cactaccagactagcatcaaaagagatagccaaacaaaatgagtaattaagtaaccatatgcacagagatccaggttcaagtatctaagccaccaaacat |
284 |
Q |
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| T |
47252849 |
cactaccagactagcatcaaaagagatagccaaacaaaatgagtaattaagtaaccatatgcacagagatccaggttcaagtatctaagccaccaaacat |
47252948 |
T |
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| Q |
285 |
attttgcctaaggctaactaagttgattgccaaacaccacttaacccctaagacagtatttctgatttagattgtcactcttctacaaagtaat |
378 |
Q |
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| T |
47252949 |
attttgcctaaggctaactaagttgattgccaaacaccacttaacccctaagacagtatttctgattcagattgtcactcttctacaaagtaat |
47253042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 47252652 - 47252828
Alignment:
| Q |
13 |
aatatcaatttatatgaaaaataaaatgtagatgaatacaagtgtttcaaaagtgtgttattcttgattcatcacttcaaaaatacattgtatgttgcaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47252652 |
aatatcaatttatatgaaaaataaaatgtagatgaatacaagtgtttcaaaagtgtgttattcttgattcatcacttcaaaaatacattgtatgttgcaa |
47252751 |
T |
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| Q |
113 |
atgtatgtctattcattttatatttctctaaaaacttatcctaggacaataggatgtataaaatttgaaaaacacta |
189 |
Q |
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| T |
47252752 |
atgtatgtctattcattttatatttctctaaaaacttatcctaggacaataggatgtataaaatttgaaaaacacta |
47252828 |
T |
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