View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_low_15 (Length: 369)
Name: NF19070_low_15
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 144 - 363
Target Start/End: Original strand, 1223942 - 1224161
Alignment:
| Q |
144 |
ttgaacggggaaatgactcaccaaagatacatccaacagaccaaatatcaacaccagtagagtaagtagaagaaccaagcaaaacctcaggagctctata |
243 |
Q |
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| T |
1223942 |
ttgaacggggaaatgactcaccaaagatacatccaacagaccaaatatcaacactagtagagtaagtagaagaaccaagcaaaacctcaggagctctata |
1224041 |
T |
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| Q |
244 |
ccaaagagtaacaatctcatgagtataacttttcaacggcacagtaaaagctcttccaagccctaaatcagcaatcttcaaaatccctttcgcttgatcc |
343 |
Q |
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| T |
1224042 |
ccaaagagtaacaatctcatgagtataacttttcaacggcacagtaaaagctcttccaagccctaaatcagcaatcttcaaaatccctttcgcttgatcc |
1224141 |
T |
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| Q |
344 |
agcaacaaattctgcggttt |
363 |
Q |
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| T |
1224142 |
agcaacaaattctgcggttt |
1224161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 1223789 - 1223888
Alignment:
| Q |
18 |
aattgacccatccgatcttaatttaaccaccgagatcatctaataccgactcgatgattaatctcatagcagatccaaataacttaacttttagtattca |
117 |
Q |
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| T |
1223789 |
aattgacccatcccatcttaatttaaccaccgagatcatctaataccgactcgatgattaatctcatagca-atccaaataacttaacttttagtattca |
1223887 |
T |
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