View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19070_low_17 (Length: 356)
Name: NF19070_low_17
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 342
Target Start/End: Complemental strand, 44953904 - 44953571
Alignment:
| Q |
9 |
acatcatcatttggcatggaatctcaaattttatgtttatctcatgtcaatcaatcttcggtatacttcaatttttgtatacttcatctatttcaacttg |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44953904 |
acattatcatttggcatggaatctcaaattttatgtttatctcatgtcaatcaatcttcggtatacttcaatttttgtatacttaatctatttcaacttg |
44953805 |
T |
|
| Q |
109 |
tttgaaatatatcaacaatttgttagaaattgaaatatgtagtagtacttaaattgaaccccaagaaaggcaaggaaaagggagaaaatgatatcaaatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44953804 |
tttgaaatatatcaacaatttgttagaaattgaaatatgtagtagtacttaaattgaaccccaagaaaggcaaggaaaagggagaaaatgatatcaaatt |
44953705 |
T |
|
| Q |
209 |
ggactcaatgccgacatgtcttaaatcaagtcctatagaatatatgttaactgtttatgttatgactatgtttcgatgtgataaatttgtaatgactttg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44953704 |
ggactcaatgccgacatgtcttaaatcaagtcctatagaatatatgttaactgtttatgttatgactatgtttcgatgtgataaatttgtaatgactttg |
44953605 |
T |
|
| Q |
309 |
ttatgttacgagaaattttttataacattgttat |
342 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
44953604 |
ttatgttgcgagaaattttttataacattgttat |
44953571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 44994770 - 44994845
Alignment:
| Q |
86 |
tatacttcatctatttcaacttgtttgaaatatatcaacaatttgttagaaattgaaatatgtagtagtacttaaa |
161 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
44994770 |
tatacttcatctatttcaacctgtttgaaatatatcaacaatttgtcagaaattgacatatgtagtagtacataaa |
44994845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University