View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_low_18 (Length: 334)
Name: NF19070_low_18
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 44341442 - 44341749
Alignment:
| Q |
17 |
ataacatgcaaattaaataattgagtatatataaacatacccatattcttctcctaacatttttctcaggccactgatcaagttgctccttaacaaacaa |
116 |
Q |
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| T |
44341442 |
ataacatgcaaattaaataattgagtatatataaacatacccatattcttctcctaacatttttctcaggccactgatcaagttgctccttaacaaacaa |
44341541 |
T |
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| Q |
117 |
ggggaacatgtaaccttcatagtatatgccatatcttttgctaatgaaattccactgccccaattcacactgtcatatgaatatcaaattaattataatt |
216 |
Q |
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| T |
44341542 |
ggggaacatgtaaccttcatagtatatgccatatcttttgctaatgaaattccactgccccaattcacactgtcatatgaatatcaaattaa--ataatt |
44341639 |
T |
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| Q |
217 |
cagtttcactagatgaagaagaaaaaacaaatattttcataattatatgaagtgtccaattaatatatacctcaactaatcctgtgactcctgcttcttc |
316 |
Q |
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| T |
44341640 |
cagtttcactagaagaagaagaaaaaacaaatattttcataattatatgaagtgtccaatta----atacctcaactaatcctgtgactcctgcttcttc |
44341735 |
T |
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| Q |
317 |
aagggattctctgc |
330 |
Q |
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| T |
44341736 |
aagggattctctgc |
44341749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 49 - 183
Target Start/End: Complemental strand, 11456165 - 11456031
Alignment:
| Q |
49 |
aaacatacccatattcttctcctaacatttttctcaggccactgatcaagttgctccttaacaaacaaggggaacatgtaaccttcatagtatatgccat |
148 |
Q |
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| T |
11456165 |
aaacatacccatattcttgtacgtagatttttctcaggccagtgttcaagttgttccttaacaagtaagggaaacatgtgaccttcatagtatgtaccat |
11456066 |
T |
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| Q |
149 |
atcttttgctaatgaaattccactgccccaattca |
183 |
Q |
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| T |
11456065 |
atctcttgctaatgaaactccattcacccaattca |
11456031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 11455927 - 11455867
Alignment:
| Q |
271 |
tccaattaat-atatacctcaactaatcctgtgactcctgcttcttcaagggattctctgc |
330 |
Q |
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|||||||||| | |||||||||| |||| | |||||||||||||||||||||||||||| |
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| T |
11455927 |
tccaattaattaaatacctcaacagttcctataactcctgcttcttcaagggattctctgc |
11455867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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