View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_low_19 (Length: 327)
Name: NF19070_low_19
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 2385431 - 2385171
Alignment:
| Q |
13 |
atactcgaatcaaactagctttaggtgctgcacgaggccttgctcgtatccattccgaaaatggtggaaaacttgtacatggcaatgtcaaatcctcaaa |
112 |
Q |
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| T |
2385431 |
atactcggatcaaactagctttaggtgctgcacgaggccttgctcatatccattccaaaaatggtggaaaacttgtacatggcaatgtcaaatcctcaaa |
2385332 |
T |
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| Q |
113 |
tatctttcttaacactaagcaatacggatgtgtatctcatcttgacttggcaaccataatgagctcagtcgtccagcccatctcacgaggatccggatac |
212 |
Q |
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| T |
2385331 |
tatctttcttaacactaagcaatacgggtgtgtttctgatcttggcttggcaaccataatgagctcagtcgtccagcccatctcacgagcatccggatac |
2385232 |
T |
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| Q |
213 |
caagcaccagaagttacagacagcaggaaaactacacagccttcagatgtttatagctttg |
273 |
Q |
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| T |
2385231 |
cgagcaccagaagttacagacaccaggaaagccacacagccttcagatgtttacagctttg |
2385171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 273
Target Start/End: Original strand, 41730922 - 41731167
Alignment:
| Q |
28 |
tagctttaggtgctgcacgaggccttgctcgtatccattccgaaaatggtggaaaacttgtacatggcaatgtcaaatcctcaaatatctttcttaacac |
127 |
Q |
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| T |
41730922 |
tagctttaggtgcagcaagaggcattgctcaaatccatgtcgagaatggcggtaaacttgtccatggcaacatcaagtcctcaaatatctttctcaatac |
41731021 |
T |
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| Q |
128 |
taagcaatacggatgtgtatctcatcttgacttggcaaccataatgagctcagtcgtccagcccatctcacgaggatccggataccaagcaccagaagtt |
227 |
Q |
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| T |
41731022 |
caaacaatatggttgtgtatctgatcttggtctagcaaccatatcaacctcgcttgccctacccatctcacgtgcagctggttaccgagcacctgaagtt |
41731121 |
T |
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| Q |
228 |
acagacagcaggaaaactacacagccttcagatgtttatagctttg |
273 |
Q |
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| T |
41731122 |
acagacacaaggaaagcagcacagccttctgatgtttacagctttg |
41731167 |
T |
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