View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_low_2 (Length: 671)
Name: NF19070_low_2
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 3e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 24 - 230
Target Start/End: Original strand, 8777962 - 8778171
Alignment:
| Q |
24 |
gtataacaacaccgcttttacctcacttatatctactgatcaacctatttgctacctgctagtactcgaccctacttagacgtcaaagtcctttgcaagc |
123 |
Q |
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| T |
8777962 |
gtataacaacaccgcttttacctcacttatatctactgatcaacctatttgctacctgctagtactcgaccctacttagacgtcaaagtcctttgcaagc |
8778061 |
T |
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| Q |
124 |
acactccccttcgttggagaaggggtgtatgaccactcctatatgattcaatcatcga--atggaag-acaccccttgctcataatgtacacccacaatt |
220 |
Q |
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| T |
8778062 |
acactccccttcgttggagaaggggtctacgaccagtcctatatgattcaatcatcgaggatggaagcacaccccttgctcataatgtacacccacaatt |
8778161 |
T |
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| Q |
221 |
attcatacat |
230 |
Q |
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| T |
8778162 |
attcatacat |
8778171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 322 - 451
Target Start/End: Original strand, 8778268 - 8778397
Alignment:
| Q |
322 |
cattcaaacatctgtaatgagcatacaaaaatctaaagtcaaccaacaatgcaatcaaattaaacagttaatgaatttattaatcaagctattagaaaca |
421 |
Q |
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| T |
8778268 |
cattcaaacatctgtaatgagcatacaaaaatctaaaatcaaccaacaatgcaatcaaattaaacagttaatgaatttattaatcaagctattagaaaca |
8778367 |
T |
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| Q |
422 |
tgagccacataatgccaaaaggagtccagc |
451 |
Q |
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| T |
8778368 |
tgagccacataatgccaaaaggagtccagc |
8778397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 483 - 655
Target Start/End: Original strand, 8778429 - 8778608
Alignment:
| Q |
483 |
cactatttattttaaattaacaatgtccagacagatgagtatttcccatcaccgttttgctttttaaggttgagaggaatgagccaattagtggaacaaa |
582 |
Q |
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| T |
8778429 |
cactatttatttttaattaacaatgtccagacagatgagtatttcccatcgccgttttgc-ttttaaggttgagaggaatgagccaattagtggaacaaa |
8778527 |
T |
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| Q |
583 |
--------gatcacattaacaagtttaaatggtttatgcacattcaccaatgaaggnnnnnnnngtagaaatagaaataat |
655 |
Q |
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| T |
8778528 |
gctcatatgatcacatcaacaagtttaaatggtttatgcacattcaccaatgaaggaaaaaaaagtagaaatagaaataat |
8778608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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