View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_low_21 (Length: 306)
Name: NF19070_low_21
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 1867210 - 1866931
Alignment:
| Q |
9 |
atcatcaacaacaataacagactccaaagactcaaccctagcaactgtagggttattaacaattggagccctacacataggacaattagtatgcgaccta |
108 |
Q |
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| T |
1867210 |
atcatcaacaacaataacagactccaaagactcaaccctagcaactgtagggttattaacaattggagccctacacataggacaattggtatgcgaccta |
1867111 |
T |
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| Q |
109 |
agccaagtatcaatacaaggtaaatgaaaagcatgatgacacttaggtaaaagtctaagattctcatcttcttcaaactcactcaaacatacagaacatt |
208 |
Q |
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| T |
1867110 |
agccaagtatcaatacaaagtaaatgaaaagcatgatgacacttaggtaaaagtctaagattctcatcttcttcaaactcactcaaacatacagaacatt |
1867011 |
T |
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| Q |
209 |
cagttccttcaatcaaaccttcacctctcttatacttacaaacactaattgcattgataacagattgatgaagacctaag |
288 |
Q |
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| T |
1867010 |
cagttccttcaatcaaaccttcacctctcttatacttacaaacactaattgcattgataacagattgatgaagacctaag |
1866931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 66 - 284
Target Start/End: Original strand, 37227820 - 37228038
Alignment:
| Q |
66 |
aacaattggagccctacacataggacaattagtatgcgacctaagccaagtatcaatacaaggtaaatgaaaagcatgatgacacttaggtaaaagtcta |
165 |
Q |
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| T |
37227820 |
aacaataggagccctacacataggacagttaatgtgtgatctaagccaagtatcaatacaaggtaaatgaaaagcatggttacactttggcaaaagtcta |
37227919 |
T |
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| Q |
166 |
agattctcatcttcttcaaactcactcaaacatacagaacattcagttccttcaatcaaaccttcacctctcttatacttacaaacactaattgcattga |
265 |
Q |
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| T |
37227920 |
agattctcatcttcttcaaactcactcaaacaaacagaacaatctgatccatcaatcaagccttcatctttcttatacttaacaacagtgattgcattaa |
37228019 |
T |
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| Q |
266 |
taacagattgatgaagacc |
284 |
Q |
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||| ||||| |||||||| |
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| T |
37228020 |
taattgattgttgaagacc |
37228038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 188
Target Start/End: Original strand, 12617797 - 12617898
Alignment:
| Q |
87 |
aggacaattagtatgcgacctaagccaagtatcaatacaaggtaaatgaaaagcatgatgacacttaggtaaaagtctaagattctcatcttcttcaaac |
186 |
Q |
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||||||||||| ||| || | ||||| |||||||||||||| | |||||||||||| ||| |||||||||||||||| | ||||||| |||| |||| |
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| T |
12617797 |
aggacaattagaatgagatttgagccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgtcttgaaac |
12617896 |
T |
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| Q |
187 |
tc |
188 |
Q |
| |
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|| |
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| T |
12617897 |
tc |
12617898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 27771620 - 27771704
Alignment:
| Q |
107 |
taagccaagtatcaatacaaggtaaatgaaaagcatgatgacacttaggtaaaagtctaagattctcatcttcttcaaactcact |
191 |
Q |
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||||||| |||||||||||||| | ||||||| |||| | |||| | ||||||||||||| | | ||||| |||| ||||||||| |
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| T |
27771620 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcact |
27771704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 37504076 - 37504160
Alignment:
| Q |
106 |
ctaagccaagtatcaatacaaggtaaatgaaaagcatgatgacacttaggtaaaagtctaagattctcatcttcttcaaactcac |
190 |
Q |
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||||||||||||||||||||||| | ||||||||| || ||||||||| |||| ||| ||| |||| || |||| ||| |||| |
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| T |
37504076 |
ctaagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaattcac |
37504160 |
T |
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