View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_low_23 (Length: 286)
Name: NF19070_low_23
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 52829708 - 52829436
Alignment:
| Q |
1 |
taatccttttttggttctgttgaatgtagtgtttcatcgttatttaatcctactaaattaatattctaatttctatcacattacatacccttaagagaga |
100 |
Q |
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| T |
52829708 |
taatccttttttggttctgttgaaagtagtgtttcatcgttatttaatcctactaaattaatattctaatttctatcacattacatacccttaagagaga |
52829609 |
T |
|
| Q |
101 |
atatgcttataacctatacgtatattctgaaatattttcgtgcatgcacagtttactttctcaaggtttagctggaatccaacctgttgacattcccggg |
200 |
Q |
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| T |
52829608 |
atatgcttataacttatacgtatattctgaaatattttcgtgcatgcacagtttactttctcaaggtttagctggaatccaacctgttgacattcccggg |
52829509 |
T |
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| Q |
201 |
attgagaatgtaagctctattccaccaatgctttgcttagtaacaatgatgtattgcttaaaggtgtatctct |
273 |
Q |
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| T |
52829508 |
attgagaatgtaagctctattccaccaatgctttgcttagtaacaatgatgtattgcttgaaggtgtatctct |
52829436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 52829804 - 52829757
Alignment:
| Q |
1 |
taatccttttttggttctgttgaatgtagtgtttcatcgttatttaat |
48 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
52829804 |
taatccttttttggttctgttgaaagtagtgtttcatcattatttaat |
52829757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 181
Target Start/End: Complemental strand, 8275545 - 8275517
Alignment:
| Q |
153 |
ttactttctcaaggtttagctggaatcca |
181 |
Q |
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| T |
8275545 |
ttactttctcaaggtttagctggaatcca |
8275517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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