View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_low_24 (Length: 256)
Name: NF19070_low_24
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_low_24 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 26901113 - 26901344
Alignment:
| Q |
9 |
agaacccacggagacacataacaacacactaggaaagtaacattttggaaatttatgacaataatagcacgtgacgaatcatgttgtccaaattcaccaa |
108 |
Q |
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| T |
26901113 |
agaacccacatagacacataacaacacactacgaaagtaacattttggaaatttatgacaataatagcacgtgatgaatcatgttgtccaaattcaccaa |
26901212 |
T |
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| Q |
109 |
tgaagatccaaatgccccataagcattataatgtgccaattctttcaacctcaaagctttctctttcatttctttacccttttctccatccatcaattcc |
208 |
Q |
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| T |
26901213 |
tgaagatccaaatgccccataagcattatcatgtgccaattctttcaacctcaaagctttctctttcatttctttacccttttctccttccattaactcc |
26901312 |
T |
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| Q |
209 |
ctcacaagaccctcaatcttatccctcttagc |
240 |
Q |
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|||||||| |||||| |||||||||||||| |
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| T |
26901313 |
ttcacaagaatctcaattttatccctcttagc |
26901344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 26671978 - 26672058
Alignment:
| Q |
160 |
caaagctttctctttcatttctttacccttttctccatccatcaattccctcacaagaccctcaatcttatccctcttagc |
240 |
Q |
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| T |
26671978 |
caaagctttttctttcatctctttacccttttctccttccattaactccttcacaagaatctctattttgtccctcttagc |
26672058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 26943576 - 26943656
Alignment:
| Q |
160 |
caaagctttctctttcatttctttacccttttctccatccatcaattccctcacaagaccctcaatcttatccctcttagc |
240 |
Q |
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| T |
26943576 |
caaagctttttctttcatctctttacccttttctccttccattaactccttcacaagaatctctattttgtccctcttagc |
26943656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 91664 - 91584
Alignment:
| Q |
160 |
caaagctttctctttcatttctttacccttttctccatccatcaattccctcacaagaccctcaatcttatccctcttagc |
240 |
Q |
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||||||||| ||||||| |||||||||||||| ||||||| ||| ||| ||||||| | |||||| || ||||||||||| |
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| T |
91664 |
caaagcttttgctttcatctctttacccttttcaccatccaacaactccttcacaaggctctcaattttgtccctcttagc |
91584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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