View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_low_25 (Length: 251)
Name: NF19070_low_25
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 23937652 - 23937846
Alignment:
| Q |
11 |
cataggtatagggtaagcataagtgtggaaatttggctcaacatgaacaaggaacaccattccctcgt---tttcagatgatgttccttccatagtatta |
107 |
Q |
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| T |
23937652 |
cataggtatagggtatgcataagtgtgaaaatttggctcaacatgaacaagaaacactatcccctcctcattttcagatgttgttccattcatagtatca |
23937751 |
T |
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| Q |
108 |
gtagtcataatgttgaagagattatcaagggcccacttaagagcatacaagcttccatcactctcatctattgccaccataaccttcatcttcat |
202 |
Q |
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| T |
23937752 |
gtagccataatgttgaagaggttatcaagggcccacttaagagcatacaagcttccatcactctcatctattgccaccatcaccttcatcttcat |
23937846 |
T |
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Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 23931955 - 23932136
Alignment:
| Q |
28 |
cataagtgtggaaatttggctcaacatgaacaaggaacaccattccctcgttttcagatgatgttccttccatagtattagtagtcataatgttgaagag |
127 |
Q |
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| T |
23931955 |
cataattgtggaaaatgggttcaacatgaacaagaaacaccattccctcattttcagatgatgttccttccatggta------gtcataacgttgaagag |
23932048 |
T |
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| Q |
128 |
attatcaagggcccacttaagagcatacaagcttccatcactctcatctattgccaccataaccttcatcttcatccttctcttttct |
215 |
Q |
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| T |
23932049 |
attatcaagggcccacttaagggcataaaagcttccatcactttcatctattgccaccataaccttcatcttcatccttctctcttct |
23932136 |
T |
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