View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19070_low_36 (Length: 225)

Name: NF19070_low_36
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19070_low_36
NF19070_low_36
[»] chr4 (9 HSPs)
chr4 (10-214)||(5048689-5048893)
chr4 (21-114)||(48142651-48142744)
chr4 (21-111)||(52083134-52083224)
chr4 (21-111)||(52094141-52094231)
chr4 (23-110)||(52095860-52095947)
chr4 (65-110)||(56179147-56179192)
chr4 (65-115)||(30000975-30001025)
chr4 (21-111)||(54200383-54200473)
chr4 (65-115)||(5370599-5370649)
[»] chr2 (10 HSPs)
chr2 (21-115)||(36988573-36988667)
chr2 (21-115)||(2334894-2334988)
chr2 (23-113)||(34389383-34389473)
chr2 (23-113)||(29867457-29867548)
chr2 (21-113)||(36206142-36206234)
chr2 (65-113)||(5723753-5723801)
chr2 (21-113)||(38311933-38312025)
chr2 (65-113)||(45099351-45099399)
chr2 (65-113)||(4503635-4503683)
chr2 (66-114)||(6595518-6595566)
[»] chr7 (5 HSPs)
chr7 (21-114)||(23554617-23554710)
chr7 (21-113)||(19495549-19495640)
chr7 (21-113)||(29990653-29990745)
chr7 (65-114)||(35853529-35853578)
chr7 (65-113)||(24515263-24515311)
[»] chr6 (12 HSPs)
chr6 (21-114)||(33160831-33160924)
chr6 (18-113)||(9183504-9183599)
chr6 (36-113)||(5407440-5407517)
chr6 (36-113)||(5411765-5411842)
chr6 (21-114)||(5413925-5414018)
chr6 (38-113)||(16452953-16453028)
chr6 (65-113)||(5406701-5406749)
chr6 (65-113)||(5411026-5411074)
chr6 (65-113)||(31405176-31405224)
chr6 (21-113)||(22964229-22964322)
chr6 (21-113)||(23824071-23824164)
chr6 (67-113)||(30835042-30835088)
[»] chr1 (5 HSPs)
chr1 (23-114)||(3188928-3189019)
chr1 (23-114)||(3197745-3197836)
chr1 (23-114)||(3206563-3206654)
chr1 (65-115)||(20762266-20762316)
chr1 (65-113)||(13316821-13316869)
[»] chr5 (6 HSPs)
chr5 (21-115)||(25412359-25412453)
chr5 (23-110)||(30683407-30683494)
chr5 (21-115)||(13239329-13239423)
chr5 (21-114)||(13342658-13342751)
chr5 (65-115)||(30182203-30182253)
chr5 (65-114)||(36074548-36074597)
[»] chr3 (8 HSPs)
chr3 (21-113)||(7764030-7764122)
chr3 (21-114)||(7761842-7761935)
chr3 (21-113)||(3393184-3393276)
chr3 (38-113)||(9634816-9634891)
chr3 (65-113)||(5258668-5258716)
chr3 (65-113)||(5260826-5260874)
chr3 (67-115)||(9636653-9636701)
chr3 (65-113)||(45094761-45094809)
[»] chr8 (10 HSPs)
chr8 (21-114)||(17982250-17982343)
chr8 (23-114)||(12703138-12703229)
chr8 (21-113)||(1746716-1746808)
chr8 (21-113)||(19948799-19948891)
chr8 (21-113)||(44303454-44303545)
chr8 (18-113)||(27810876-27810971)
chr8 (65-113)||(31217853-31217901)
chr8 (65-113)||(34254851-34254899)
chr8 (65-113)||(34257027-34257075)
chr8 (65-106)||(19945863-19945904)
[»] scaffold0016 (1 HSPs)
scaffold0016 (28-113)||(114165-114250)
[»] scaffold0002 (1 HSPs)
scaffold0002 (35-113)||(434157-434236)
[»] scaffold1519 (1 HSPs)
scaffold1519 (65-115)||(482-532)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 5048893 - 5048689
Alignment:
Q  10 aatgtcacaatagctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacac 109  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |||||| |||||||||||    
T  5048893 aatgtcacaacaactctcgacattaccaaaatcgtgacacgcttgccaaatcgtatcacgatttctctacttcccatctttacaatttaaagacatacac 5048794  T
Q  110 aacaatgtgtttctattccatattgtagacagttacaagttcagccttagttatctatannnnnnnngcaattattgctccatcatcttcacaacatttc 209  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |        ||  |||||||||||||||||||||||||||||    
T  5048793 aacaatgtgtttgtattccatattgtagacagttacaagttcagccttagttatctacattttttttgccgttattgctccatcatcttcacaacatttc 5048694  T
Q  210 ttcat 214  Q
    |||||    
T  5048693 ttcat 5048689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 48142744 - 48142651
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaacaa 114  Q
    ||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  48142744 agctctcgacattaccaaaatcgtgacacgctttccaaatcgtgtcacgatttctctgcttcccaactttgcaatttgaagacatacacaacaa 48142651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 52083134 - 52083224
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaa 111  Q
    ||||||||||||| |||||||  |||||||||||||||| ||| ||||||||||||| |||| ||||||||||||||||||||||||||||    
T  52083134 agctctcgacattgccaaaattatgacacgcttgccaaatcgtgtcacgatttctctgcttttcaactttgcaatttgaagacatacacaa 52083224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 52094141 - 52094231
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaa 111  Q
    ||||||||||||| |||||||  |||||||||||||||| ||| ||||||||||||| |||| ||||||||||||||||||||||||||||    
T  52094141 agctctcgacattgccaaaattatgacacgcttgccaaatcgtgtcacgatttctctgcttttcaactttgcaatttgaagacatacacaa 52094231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 52095860 - 52095947
Alignment:
Q  23 ctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacaca 110  Q
    |||| |||||| |||||||| |||||||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  52095860 ctcttgacattgccaaaatcatgacacgcttgccaaatcgtgtcacgatttctctgcttcccaactttgcaatttgaagacatacaca 52095947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 56179147 - 56179192
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacaca 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  56179147 tcacgatttctctgctttccaactttgcaatttgaagacatacaca 56179192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 30000975 - 30001025
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaacaat 115  Q
    ||||||||||||| ||| |||||||| ||||||||||||||||||||||||    
T  30000975 tcacgatttctctgcttcccaactttacaatttgaagacatacacaacaat 30001025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 54200383 - 54200473
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaa 111  Q
    ||||||||||||||||||||||||||||||| |   ||| ||| |||||||||||||| ||| ||||||   ||||||||| |||| ||||    
T  54200383 agctctcgacattaccaaaatcgtgacacgcctatgaaatcgtgtcacgatttctctatttttcaacttcataatttgaagtcataaacaa 54200473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 5370599 - 5370649
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaacaat 115  Q
    ||||||||| ||| ||| |||||||| ||||||||||||||||||||||||    
T  5370599 tcacgatttttctgcttcccaactttacaatttgaagacatacacaacaat 5370649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 36988573 - 36988667
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaacaat 115  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36988573 agctctcgacattaccaaaatcgtgacacgcttgccaaatcgtctcacgatttctctgctttccaactttgcaatttgaagacatacacaacaat 36988667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 2334894 - 2334988
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaacaat 115  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  2334894 agctctcgacattaccaaaatcgtgacatgcttgccaaatcgtatcacgatttctctgcttcccaactttgcaatttgaagacatacacaacaat 2334988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 34389383 - 34389473
Alignment:
Q  23 ctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||| ||||    
T  34389383 ctctcgacattaccaaaatcgtgacacgcttgccaaatcgtgtcatgatttctctgctttccaactttgcaatttgaagacatacataaca 34389473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 29867548 - 29867457
Alignment:
Q  23 ctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgc-aatttgaagacatacacaaca 113  Q
    ||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  29867548 ctctcgacattaccaaaatcgtgtcacgcttgccaaatcgtgtcacgatttctctgttttccaactttgcaaatttgaagacatacacaaca 29867457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 36206142 - 36206234
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||||||||||||||| |||| |||||||| | | ||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  36206142 agctctcgacattaccaaaatcgtgtcacgattgccaaatcatgtcacgatttctctgcttcccaactttgcaatttgaagacataaacaaca 36206234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 5723753 - 5723801
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  5723753 tcacgatttctctacttcccaactttacaatttgaagacatacacaaca 5723801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 38312025 - 38311933
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    |||||||||||||||||||||||||||||||     ||| ||| ||||| ||||| |  |||||||||||||||||||| |||||| ||||||    
T  38312025 agctctcgacattaccaaaatcgtgacacgcccatgaaatcgtgtcacgttttctatgttttccaactttgcaatttgatgacataaacaaca 38311933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 45099399 - 45099351
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  45099399 tcacgatttctctgcttttcaactttgcaatttgaagacatacacaaca 45099351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 4503635 - 4503683
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  4503635 tcacgatttctctgcttcccaactttgcaatttgaagacataaacaaca 4503683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 6595518 - 6595566
Alignment:
Q  66 cacgatttctctactttccaactttgcaatttgaagacatacacaacaa 114  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||||||    
T  6595518 cacgatttctctgcttcccaactttgcaatttgaagatatacacaacaa 6595566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 23554710 - 23554617
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaacaa 114  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23554710 agctctcgacattaccaaaatcgtgacacgcttgccaaattgtatcacgatttctctgctttccaactttgcaatttgaagacatacacaacaa 23554617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 19495640 - 19495549
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||||||||||| |||||| |||||||||| ||| |||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  19495640 agctctcgacattaccaaaat-gtgacatgcttgccaaatcgtgtcacgatttctctagtttccatctttgcaatttgaagacatacgcaaca 19495549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 29990745 - 29990653
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    |||||||||||||||||||||  || |||| |||||||| ||||||||||||||||| ||| ||||||||| ||||| |||||||||||||||    
T  29990745 agctctcgacattaccaaaattatgtcacgattgccaaatcgtatcacgatttctctgcttcccaactttgtaatttaaagacatacacaaca 29990653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 35853578 - 35853529
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaacaa 114  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  35853578 tcacgatttctctgcttcccaactttgcaatttgaagacatacacaacaa 35853529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 24515263 - 24515311
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  24515263 tcacgatttctctgctttccaactttgcaatttcaagacatacacaaca 24515311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 33160831 - 33160924
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaacaa 114  Q
    |||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  33160831 agctcttgacattaccaaaatcgtgacacgcttgccaaatcgtgtcacgatttctctgcttcccaactttgcaatttgaagacatacacaacaa 33160924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 9183504 - 9183599
Alignment:
Q  18 aatagctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||| ||| |||||||||  ||||||||||||||||||||||||||| ||||||    
T  9183504 aatagctatcgacattaccaaaatcgtgacacgcttgccaaatcgtgtcatgatttctctgttttccaactttgcaatttgaagacataaacaaca 9183599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 5407440 - 5407517
Alignment:
Q  36 caaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    |||||| ||| |||| |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5407440 caaaatggtgtcacgattgccaaatcgtgtcacgatttctctacttcccaactttgcaatttgaagacatacacaaca 5407517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 5411765 - 5411842
Alignment:
Q  36 caaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    |||||| ||| |||| |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5411765 caaaatggtgtcacgattgccaaatcgtgtcacgatttctctacttcccaactttgcaatttgaagacatacacaaca 5411842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 5413925 - 5414018
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaacaa 114  Q
    ||||||||||||||  ||||||||| |||| || ||||| ||| ||||||||||||| ||| ||| ||||||||||||| ||||||||||||||    
T  5413925 agctctcgacattatgaaaatcgtgtcacgattaccaaatcgtgtcacgatttctctgcttcccatctttgcaatttgaggacatacacaacaa 5414018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 16452953 - 16453028
Alignment:
Q  38 aaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||| || |||| |||||||| ||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||    
T  16452953 aaatcatgtcacgattgccaaatcgtgtcacgatttctctgcttcccaactttacaatttgaagacatacacaaca 16453028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 5406701 - 5406749
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  5406701 tcacgatttctctgcttcccaactttgcaatttgaagacatacacaaca 5406749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 5411026 - 5411074
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  5411026 tcacgatttctctgcttcccaactttgcaatttgaagacatacacaaca 5411074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 31405176 - 31405224
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  31405176 tcacgatttctctacttcccaactttacaatttgaagacatacacaaca 31405224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 22964229 - 22964322
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctct-actttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||||||||||||||||||||| |   ||| ||| |||||||||||||   ||||||||||| || ||||||| |||| ||||||    
T  22964229 agctctcgacattaccaaaatcgtgacacgcctatgaaatcgtgtcacgatttctctgtttttccaactttacactttgaagtcataaacaaca 22964322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 23824164 - 23824071
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctct-actttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||||||||||||||||||||| |   ||| ||| |||||||||||||   ||||||||||| || ||||||| |||| ||||||    
T  23824164 agctctcgacattaccaaaatcgtgacacgcctatgaaatcgtgtcacgatttctctgtttttccaactttacactttgaagtcataaacaaca 23824071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 30835042 - 30835088
Alignment:
Q  67 acgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||| ||| | |||||||||||||||||||||||||||||    
T  30835042 acgatttctctgcttccaaactttgcaatttgaagacatacacaaca 30835088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 3189019 - 3188928
Alignment:
Q  23 ctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaacaa 114  Q
    |||||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  3189019 ctctcgacattaccaaaatcgtgacacgcttgccaaattgtgtcacgatttctctgctttccaactttacaatttgaagacatacacaacaa 3188928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 3197836 - 3197745
Alignment:
Q  23 ctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaacaa 114  Q
    |||||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  3197836 ctctcgacattaccaaaatcgtgacacgcttgccaaattgtgtcacgatttctctgctttccaactttacaatttgaagacatacacaacaa 3197745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 3206654 - 3206563
Alignment:
Q  23 ctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaacaa 114  Q
    |||||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  3206654 ctctcgacattaccaaaatcgtgacacgcttgccaaattgtgtcacgatttctctgctttccaactttacaatttgaagacatacacaacaa 3206563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 20762316 - 20762266
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaacaat 115  Q
    ||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  20762316 tcacgatttctctgcttcccaactttgcaatttgaaaacatacacaacaat 20762266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 13316821 - 13316869
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||| ||| |||||||||||||||||||| ||||||||||    
T  13316821 tcacgatttctctgcttcccaactttgcaatttgaagagatacacaaca 13316869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 25412453 - 25412359
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaacaat 115  Q
    ||||||||||||||||||||||||| |||| |||||||| ||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  25412453 agctctcgacattaccaaaatcgtgtcacgattgccaaatcgtgtcacgatttctctgcttcccaactttgcaatttgaagacatacacaacaat 25412359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 30683407 - 30683494
Alignment:
Q  23 ctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacaca 110  Q
    |||||||||||||||||||||||||||||||| ||||  || |||||||||||||  |||| ||||||||||||||||||||||||||    
T  30683407 ctctcgacattaccaaaatcgtgacacgcttgtcaaattgtgtcacgatttctctgttttctaactttgcaatttgaagacatacaca 30683494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 13239423 - 13239329
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaacaat 115  Q
    ||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |||  || |||||||||||||||||| ||||||| ||||||    
T  13239423 agctctcgacattaccaaaatcgtgacacgcttaccaaatcgtgtcacgatttatctgtttcccaactttgcaatttgaaaacatacaaaacaat 13239329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 13342751 - 13342658
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaacaa 114  Q
    ||||||||||||||||||||||||| |||| ||| |||| | | ||||||||||||| ||| ||| |||| |||||||||||||||||||||||    
T  13342751 agctctcgacattaccaaaatcgtgtcacgattggcaaatcatgtcacgatttctctgcttcccagctttacaatttgaagacatacacaacaa 13342658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 30182253 - 30182203
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaacaat 115  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  30182253 tcacgatttctctgcttcccaactttgcaatttgaagacatacacaacaat 30182203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 36074548 - 36074597
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaacaa 114  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  36074548 tcacgatttctctgcttaccaactttgcaatttgaagacatacacaacaa 36074597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 7764122 - 7764030
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    |||||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  7764122 agctctcgccattaccaaactcgtgacacgcttgccaaatcgtgtcacgatttctctgcttcccaactttgcaatttgaagacatacacaaca 7764030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 7761935 - 7761842
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaacaa 114  Q
    |||||| || ||||||||||| ||||||||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  7761935 agctcttgatattaccaaaatagtgacacgcttgccaaatcgtgtcacgatttctctgcttcccaactttgcaatttgaagacatacacaacaa 7761842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 3393276 - 3393184
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||||||||||||||| | || |||||||| ||| | ||||||||||| ||| | |||||||||||||||||||||||||||||    
T  3393276 agctctcgacattaccaaaatcgtgtcgcgattgccaaatcgtgttacgatttctctgcttccgaactttgcaatttgaagacatacacaaca 3393184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 9634816 - 9634891
Alignment:
Q  38 aaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    |||||||| |||| |||||||| ||| ||||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  9634816 aaatcgtgtcacgattgccaaatcgtgtcacgatttctctgcttcccatctttgcaatttgaagacatacacaaca 9634891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 5258668 - 5258716
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  5258668 tcacgatttctctgcttcccaactttgcaatttgaagacatacacaaca 5258716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 5260826 - 5260874
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  5260826 tcacgatttctctgcttcccaactttgcaatttgaagacatacacaaca 5260874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 9636653 - 9636701
Alignment:
Q  67 acgatttctctactttccaactttgcaatttgaagacatacacaacaat 115  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  9636653 acgatttctctgcttcccaactttgcaatttgaagacatacacaacaat 9636701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 45094809 - 45094761
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||||||||    
T  45094809 tcacgatttctctgcttcccaactttgtaatttgaagacatacacaaca 45094761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 17982343 - 17982250
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaacaa 114  Q
    ||||||||||||||||||||||||| |||| |||||||| | | ||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  17982343 agctctcgacattaccaaaatcgtgtcacgattgccaaatcatgtcacgatttctctgcttcccaactttgcaatttgaagacatacacaacaa 17982250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 12703138 - 12703229
Alignment:
Q  23 ctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaacaa 114  Q
    |||||||||||| |||||||||||||||||||||||| | | ||||||||| |||| ||||||||||||||||||||||||||| |||||||    
T  12703138 ctctcgacattagcaaaatcgtgacacgcttgccaaatcatgtcacgatttatctattttccaactttgcaatttgaagacataaacaacaa 12703229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 1746716 - 1746808
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||||||||||||||| |||| ||||||||  || ||||||||||||| ||| |||||| | ||||||||||||||||||||||    
T  1746716 agctctcgacattaccaaaatcgtgtcacgattgccaaattgtgtcacgatttctctgcttcccaactatacaatttgaagacatacacaaca 1746808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 19948799 - 19948891
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    |||||||||||||| |||||||||| |||| ||| |||| ||| ||||||||||||| ||| |||| ||||||||||||||||||| ||||||    
T  19948799 agctctcgacattatcaaaatcgtgtcacgattgtcaaatcgtgtcacgatttctctgcttcccaaatttgcaatttgaagacataaacaaca 19948891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 44303545 - 44303454
Alignment:
Q  21 agctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||| ||||| | ||| |||| ||||||||  || ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  44303545 agctctcgacattgccaaatt-gtgtcacgattgccaaattgtgtcacgatttctctgcttcccaactttgcaatttgaagacatacacaaca 44303454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 27810971 - 27810876
Alignment:
Q  18 aatagctctcgacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    |||||||||||||||||||||||||| ||||||| |   ||| ||| |||||||||||||  ||| ||||||  |||||||||| |||| ||||||    
T  27810971 aatagctctcgacattaccaaaatcgcgacacgcctatgaaatcgtgtcacgatttctctgtttttcaacttcacaatttgaagtcataaacaaca 27810876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 31217901 - 31217853
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  31217901 tcacgatttctctgcttcccaactttgcaatttgaagacataaacaaca 31217853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 34254851 - 34254899
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  34254851 tcacgatttctctgcttcccaactttgcaatttgaagacatacgcaaca 34254899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 34257027 - 34257075
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    ||||||||||||| ||| |||||| ||||||||||||||||||| ||||    
T  34257027 tcacgatttctctgcttcccaactgtgcaatttgaagacatacataaca 34257075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 19945863 - 19945904
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacata 106  Q
    ||||||||||||| |||  |||||||||||||||||||||||    
T  19945863 tcacgatttctctgcttctcaactttgcaatttgaagacata 19945904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 114250 - 114165
Alignment:
Q  28 gacattaccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagacatacacaaca 113  Q
    |||| ||||||||||||||||| ||||||||| | | ||||||||||||| ||| |||||||||||||||||| ||||||||||||    
T  114250 gacagtaccaaaatcgtgacacacttgccaaatcttgtcacgatttctctgcttcccaactttgcaatttgaaaacatacacaaca 114165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 434236 - 434157
Alignment:
Q  35 ccaaaatcgtgacacgcttgccaaaccgtatcacgatttctctactttccaactttgcaatttgaagaca-tacacaaca 113  Q
    ||||||||||| |||| |||||||| |  |||||||||||||| ||| |||||||||||||||||||||| |||||||||    
T  434236 ccaaaatcgtgtcacgattgccaaatctaatcacgatttctctgcttcccaactttgcaatttgaagacattacacaaca 434157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 532 - 482
Alignment:
Q  65 tcacgatttctctactttccaactttgcaatttgaagacatacacaacaat 115  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||||||||||    
T  532 tcacgatttctctgcttcccaactttgcaatttgaagtcatacacaacaat 482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University