View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_low_37 (Length: 214)
Name: NF19070_low_37
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 17352314 - 17352494
Alignment:
| Q |
15 |
cagagatcaggaccatgtatgtgtaaagctgcccttccccactcaacattgaatatgctactgctactaaagaaaacagatgatgaattacctgaaccaa |
114 |
Q |
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| T |
17352314 |
cagagatcaggaccatgtatgtgtaaagctgcccttccccgctcaacattgaatatgctactgctactaaagaaaatagatgatgaattacctgaaccaa |
17352413 |
T |
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| Q |
115 |
tgttaataagaagacaagttaaatctcgactccagctgggttcctataaagtgaaatgtcttaaattgaacaagagcattcaac |
198 |
Q |
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| T |
17352414 |
tgttaat---aagacaagttaaatctcaactcctgttgggttcctataaagtgaaatgtcttaaattgaacaagagcattcaac |
17352494 |
T |
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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 39439298 - 39439397
Alignment:
| Q |
15 |
cagagatcaggaccatgtatgtgtaaagctgcccttccccactcaacattgaatatgctactgctactaaagaaaacagatgatgaattacctgaaccaa |
114 |
Q |
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||||||| || |||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
39439298 |
cagagatgagaaccatgtatgtgtacagctgtccttctccactcaacattgaataggctactgctactaaagaaaagagatgatgaatcacctgaaccaa |
39439397 |
T |
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