View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19070_low_39 (Length: 208)

Name: NF19070_low_39
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19070_low_39
NF19070_low_39
[»] chr6 (12 HSPs)
chr6 (18-189)||(2935095-2935266)
chr6 (21-189)||(2937959-2938127)
chr6 (20-189)||(2996784-2996953)
chr6 (18-189)||(2929805-2929976)
chr6 (18-189)||(2952432-2952603)
chr6 (23-189)||(2927661-2927827)
chr6 (23-189)||(3003195-3003361)
chr6 (18-184)||(2974503-2974669)
chr6 (60-189)||(2983404-2983533)
chr6 (86-189)||(2965091-2965194)
chr6 (98-189)||(2658384-2658475)
chr6 (19-93)||(2979376-2979450)
[»] scaffold0024 (1 HSPs)
scaffold0024 (19-189)||(34653-34823)
[»] chr7 (1 HSPs)
chr7 (48-189)||(3339551-3339692)
[»] chr3 (2 HSPs)
chr3 (68-189)||(49618957-49619078)
chr3 (40-195)||(49613954-49614109)


Alignment Details
Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 2935095 - 2935266
Alignment:
Q  18 ctaatatcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatgg 117  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||| |||||||||||| |    
T  2935095 ctaatatcagttctcatttctctattctatgcaaagacttaaatgctttttgtaagaatccttggcataagttgaaggctactctcaggcgtgattattg 2935194  T
Q  118 caaaactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    |||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||||    
T  2935195 caaaactccttggcaaactgctgcttccattgctggaatcttactactttttctcactttacttcaatcagt 2935266  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 2937959 - 2938127
Alignment:
Q  21 atatcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggcaa 120  Q
    |||||||||||||  ||| |||||| |||||||| |||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||    
T  2937959 atatcagttctcaattctctattctttgcaaagaattaaatgctttctgcagtaatccttggcataagttgaaggctactctgaggcgtgattatggcaa 2938058  T
Q  121 aactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||||    
T  2938059 aactccttggcaaactgctgcttccattgctggaatcttactacttattctcactttacttcaatcagt 2938127  T

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Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 2996953 - 2996784
Alignment:
Q  20 aatatcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggca 119  Q
    ||||||||||||||  ||| |||||| ||||| |||||||||||||| ||||  |||| |||| ||||||||||||||||||| ||||||||||||||||    
T  2996953 aatatcagttctcaattctctattctttgcaaggacttaaatgctttttgtaggaatccttggcataagttgaaggctactctcaggcgtgattatggca 2996854  T
Q  120 aaactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  2996853 agactccttggcaagctgctgcttcctttgctggaattgtactacttgttctcacttttattcaatcagt 2996784  T

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Target: chr6; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 2929805 - 2929976
Alignment:
Q  18 ctaatatcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatgg 117  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||||||||| ||| | |||| |||| ||| ||||||||||||||| |||||||||||| |    
T  2929805 ctaatatcagtcctcatttctctattctatgcaaagacttaaatgctttttgttagaatccttggcataggttgaaggctactctcaggcgtgattattg 2929904  T
Q  118 caaaactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
     |  |||||||||||||||||||||||| |||||||| |  |||||||| ||||||||||||||||||||||    
T  2929905 aagtactccttggcaaactgctgcttccattgctggattcttactactttttctcactttacttcaatcagt 2929976  T

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Target: chr6; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 2952432 - 2952603
Alignment:
Q  18 ctaatatcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatgg 117  Q
    ||||||||||||||||  ||| |||| |  |||||||  ||||||| || |||| ||||| ||||||||||||||| || ||||||||||||||||||||    
T  2952432 ctaatatcagttctcaattctctattattggcaaagaaataaatgcattttgtagtaatccttggaataagttgaaagccactctgaggcgtgattatgg 2952531  T
Q  118 caaaactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    |||||||||||||||||||||||||||| |||||||||| ||||| |||| |||||||||||||||| ||||    
T  2952532 caaaactccttggcaaactgctgcttccattgctggaatcgtactccttgctctcactttacttcaaacagt 2952603  T

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Target: chr6; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 2927661 - 2927827
Alignment:
Q  23 atcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggcaaaa 122  Q
    |||||||||||  ||| |||||| |||||||||||||||||||  ||||| ||||   |  ||||||||||||||||||| |||||||||||| ||||||    
T  2927661 atcagttctcaattctctattctttgcaaagacttaaatgcttattgtaagaatccacgacataagttgaaggctactctcaggcgtgattattgcaaaa 2927760  T
Q  123 ctccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    ||||||||||||||||||||||| |||| |||||  |||||||||||||||||||||||||||||||    
T  2927761 ctccttggcaaactgctgcttccattgcgggaatcttactacttgttctcactttacttcaatcagt 2927827  T

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Target: chr6; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 3003361 - 3003195
Alignment:
Q  23 atcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggcaaaa 122  Q
    |||||||||||  ||| ||||||  ||||||||||||||||||  ||||| ||||  ||| ||||||||||||||||||| |||||||||||| ||||||    
T  3003361 atcagttctcaattctctattcttggcaaagacttaaatgcttattgtaagaatccatggcataagttgaaggctactctcaggcgtgattattgcaaaa 3003262  T
Q  123 ctccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    |||| |||||||||||||||||| ||||||||||  |||| |||| |||||||||||||||| ||||    
T  3003261 ctccctggcaaactgctgcttccattgctggaatcttactccttgctctcactttacttcaaacagt 3003195  T

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Target: chr6; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 2974503 - 2974669
Alignment:
Q  18 ctaatatcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatgg 117  Q
    ||||||||||||||||| ||| |||||| |||||||| || |||||||  ||||  |||| |||| ||| |||||||||| |||| |||||||||||| |    
T  2974503 ctaatatcagttctcatttctctattctttgcaaagaattgaatgcttattgtaggaatccttggcataggttgaaggctgctctaaggcgtgattattg 2974602  T
Q  118 caaaactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaa 184  Q
    ||| ||||||||||| |||||||||||| ||||||||||| | ||||||||||||||| || |||||    
T  2974603 caatactccttggcacactgctgcttccattgctggaatttttctacttgttctcactataattcaa 2974669  T

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Target: chr6; HSP #9
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 2983404 - 2983533
Alignment:
Q  60 atgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggcaaaactccttggcaaactgctgcttcctttgctggaattgt 159  Q
    ||||||| |||||||||| | |||||||||||||||| ||||| ||||||||||||||||| ||||||||| ||| |||||||||| |||||||| |  |    
T  2983404 atgctttttgtaataatcctaggaataagttgaaggccactctcaggcgtgattatggcaatactccttggaaaattgctgcttccgttgctggagtctt 2983503  T
Q  160 actacttgttctcactttacttcaatcagt 189  Q
    |||||||||||||||| || ||||| ||||    
T  2983504 actacttgttctcactataattcaaacagt 2983533  T

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Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 2965091 - 2965194
Alignment:
Q  86 aagttgaaggctactctgaggcgtgattatggcaaaactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaat 185  Q
    ||||||||| | ||||||| |||||||||  |||  |||||||||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||     
T  2965091 aagttgaagtccactctgatgcgtgattactgcagtactccttggcaagctgctgcttcctttgctggaatcttactacttgttctcactttaattcaaa 2965190  T
Q  186 cagt 189  Q
    ||||    
T  2965191 cagt 2965194  T

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Target: chr6; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 2658475 - 2658384
Alignment:
Q  98 actctgaggcgtgattatggcaaaactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    |||||||||||||||||| |||  ||||||||| || ||| ||||||||||||||||||  |||||||| |||||||| || ||||| ||||    
T  2658475 actctgaggcgtgattattgcagtactccttggaaagctggtgcttcctttgctggaatcttactacttattctcactataattcaaacagt 2658384  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 2979376 - 2979450
Alignment:
Q  19 taatatcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaa 93  Q
    |||||||||||||||| ||| |||||| |||||||| ||||||| ||| | || ||||| |||| || |||||||    
T  2979376 taatatcagttctcatttctctattctttgcaaagatttaaatgatttttatagtaatccttggcatgagttgaa 2979450  T

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Target: scaffold0024 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 34823 - 34653
Alignment:
Q  19 taatatcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggc 118  Q
    |||||||||||||||| ||| |||||| |||||| |||||||||| || |||| ||||| |||||||| |||||||||| |||| |||||||||||||||    
T  34823 taatatcagttctcatttctctattctttgcaaaaacttaaatgcattttgtagtaatccttggaataggttgaaggcttctctcaggcgtgattatggc 34724  T
Q  119 aaaactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  34723 aaaactccttggcaaactgctgcttccgttgctggaattttactacttgttctcactttgcttcaatcagt 34653  T

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Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 3339551 - 3339692
Alignment:
Q  48 gcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggcaaaactccttggcaaactgctgcttcctt 147  Q
    ||||||||||||||| ||| ||||| |||| |||| ||| ||||||||| ||||| |||||||||||| |||| |||||||||||||||||||||||| |    
T  3339551 gcaaagacttaaatgatttttgtaagaatccttggcataggttgaaggccactctcaggcgtgattattgcaatactccttggcaaactgctgcttccat 3339650  T
Q  148 tgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3339651 tgctggaattgtactacttgttctcactttacttcaatcagt 3339692  T

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Target: chr3 (Bit Score: 82; Significance: 6e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 49618957 - 49619078
Alignment:
Q  68 tgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggcaaaactccttggcaaactgctgcttcctttgctggaattgtactacttg 167  Q
    |||||||||| |||| ||||  ||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| ||||||||||| |||||||||    
T  49618957 tgtaataatccttggcataaactgaaggctactctcaggcgtgattatggcagtactccttggcaaactgctgcttccattgctggaattttactacttg 49619056  T
Q  168 ttctcactttacttcaatcagt 189  Q
    ||||| ||||||||||||||||    
T  49619057 ttctctctttacttcaatcagt 49619078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 40 - 195
Target Start/End: Original strand, 49613954 - 49614109
Alignment:
Q  40 tattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggcaaaactccttggcaaactgct 139  Q
    |||||||||  ||||||| |||| ||| ||| || ||| |||| |||  |||||||| ||||| || ||||||||| |||| | ||||||||||||||||    
T  49613954 tattctatgtgaagacttgaatggtttttgtcatgatccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgct 49614053  T
Q  140 gcttcctttgctggaattgtactacttgttctcactttacttcaatcagtctgtgc 195  Q
    |||||| ||||||||||| |||||||| ||||| |||||||||||||||| |||||    
T  49614054 gcttccattgctggaattttactacttattctctctttacttcaatcagtttgtgc 49614109  T

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