View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_low_5 (Length: 534)
Name: NF19070_low_5
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 3 - 512
Target Start/End: Original strand, 22043605 - 22044114
Alignment:
| Q |
3 |
atcagaaaattgataatgcaactttattttgttccatccttttgttaacagatgataatggtagtcttggttgaatctgacagtatggaatccttcatca |
102 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22043605 |
atcaggaaattgataatgcaattttattttgttccatccttttgttaacagaggataatggtagtcttggttgaatttgacagtatggaatccttcatca |
22043704 |
T |
|
| Q |
103 |
ttccatacacaccacttgtttcctaaccgagcataatatttctgtataaaatctggaccaatctcaacatttgtctattagaagggataaataaagtaga |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22043705 |
ttccatacacaccacttgtttcctaaccgagcataatatttctgtataaaatctggatcaatctcagcatttgtctattagaagggataaataaagtaga |
22043804 |
T |
|
| Q |
203 |
gttagttttatagacaacaaaaatgtaactacttagaaccaatgaagtaataaaatattaaacctgtgatgataattgtgcaatatgaacataatgaata |
302 |
Q |
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||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
22043805 |
gttagttttatagacaataaaaatttaactacttagaactaatgaagtaataaaatattaaacctgtgatgataattgtgcaatatgaacacaataaata |
22043904 |
T |
|
| Q |
303 |
ggattggatagaagtaattttgttataggtttcatctgaaagatcaagtatattgtaaaagtcatgaacttgttgtaacataaagtgatgtatatataga |
402 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22043905 |
ggattggatagaagtaattttgttataggttccatctgaaagatcaagtatattgtaaaagtcatgaacttgttgtaacataaagtgatgtatatataga |
22044004 |
T |
|
| Q |
403 |
tataaatttatcattcattacatatgtttcattgaataaaataataattggttggatagttgtataaagatatttttccagaaatagcgaagacatttaa |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
22044005 |
tataaatttatcattcattacatatgtttcattgaataaaataataattggttggatagttgtataaagatatttttccaaaaatagcaaagacatttaa |
22044104 |
T |
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| Q |
503 |
aataggaata |
512 |
Q |
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|||||||||| |
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| T |
22044105 |
aataggaata |
22044114 |
T |
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