View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19070_low_6 (Length: 523)
Name: NF19070_low_6
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 179 - 510
Target Start/End: Original strand, 45306445 - 45306772
Alignment:
| Q |
179 |
atacgtcaaatgatttttatctaactaccaaatcattttcttaatttttgaggctaaatactagcttgtactcctttagattgattatcctaatggatgt |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45306445 |
atacgtcaaatgatttttatctaactaccaaatcattttctttatttttgaggctaaatactagcttgtactcctttagattgattttcctaatggatgt |
45306544 |
T |
|
| Q |
279 |
gttttgattctgtatttaactaagaacatcattaattttgttttaggtatgaaataatatgcattccttatactcttttttgtgtagtacttgaaatgtt |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | | |||| |
|
|
| T |
45306545 |
gttttgattctgtatttaactaagaacatcattaattttgttttaggtatgaaataatatgcattccttatactctattttgtg----acaag-attgtt |
45306639 |
T |
|
| Q |
379 |
tggatatgtattcttgctaataattatccttttccaaaatccatttttcctcttaattcaccttcttgttttactt-aaatttttatgcgtaattgctaa |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
45306640 |
tggatatgtattcttgctaataattatccttttccaaaatccatttttcctcttaattcaccttcttgttttacttaaaaattttatgcgtaattgctaa |
45306739 |
T |
|
| Q |
478 |
ttttatttgttaatttgattgtgtaggatgatg |
510 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
45306740 |
ttttatttgttaatttgattatgtaggatgatg |
45306772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 45306270 - 45306365
Alignment:
| Q |
1 |
acttgtaattgctgttatttttt-actctcttaaatgagctagttttgtgtgtgtctgtggttgaggtttgattcctttgttaccactctagaacgacgg |
99 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45306270 |
acttgtaattgctgttatttttttactctcttaaatgtactagttttgtgtgtgt----ggttgaggtttgattcctttgttaccactctagaacgacgg |
45306365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University