View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_low_8 (Length: 482)
Name: NF19070_low_8
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 31844793 - 31844406
Alignment:
| Q |
1 |
tttctttttgagacattttgtnnnnnnngagtgcatgatgaagaggaacaatatgaacacaaattttaaaggctataatcacacttattacaacaatcca |
100 |
Q |
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| T |
31844793 |
tttctttttgagacattttgtaaaaaaagagtgcatgatgaagaggaacaatatgaacacaaacttgaaaggctataatcacacttattacaacaatcca |
31844694 |
T |
|
| Q |
101 |
atcatcaccaacaaaagtgataataataatggatcatcatcagaagattacatgatgaatggttgttatccatggccaccaagatcatacacatgtagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31844693 |
atcatcaccaacaaaagtgataataataatggatcatcatcagaagattacatgatgaatggttgttatccatggccaccaagatcatacacatgtagct |
31844594 |
T |
|
| Q |
201 |
tttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttcatagaagggatagagcaaggcttagacaatcatcaccaccaacaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31844593 |
tttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttcatagaagggatagagcaaggcttagacaatcatcaccaccaacaac |
31844494 |
T |
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| Q |
301 |
tcatgaaccagctcaa---attcaaggttcttctatgcttaatcttaaccttaataaccctactatcactactactaaccctaattta |
385 |
Q |
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| T |
31844493 |
tcatgaaccagctcaacttaatgaaggttcttctatgcttaatcttaaccttaataaccctactatcactactactaaccctaattta |
31844406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 273
Target Start/End: Complemental strand, 6889922 - 6889821
Alignment:
| Q |
172 |
atggccaccaagatcatacacatgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttcatagaagggatagagca |
271 |
Q |
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|||||||||||||||||| | |||||||||||||||| |||||||| ||||| |||||| | || || || |||||||||||||||| ||||||||| |
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| T |
6889922 |
atggccaccaagatcatattcttgtagcttttgtagaagagagtttaggtcagcacaagcattaggtggacatatgaatgttcatagaaaagatagagca |
6889823 |
T |
|
| Q |
272 |
ag |
273 |
Q |
| |
|
|| |
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|
| T |
6889822 |
ag |
6889821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 276
Target Start/End: Original strand, 34522585 - 34522688
Alignment:
| Q |
173 |
tggccaccaagatcatacacatgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttcatagaagggatagagcaa |
272 |
Q |
| |
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||||||||||||| || |||||| |||||||| || |||||||| || |||||||| ||||| |||||||||||| ||||||| || |||||||| | |
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| T |
34522585 |
tggccaccaagattttattcatgtaacttttgtaaaagagagtttaggtctgctcaagctcttggtggtcacatgaatattcataggagagatagagcta |
34522684 |
T |
|
| Q |
273 |
ggct |
276 |
Q |
| |
|
|||| |
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|
| T |
34522685 |
ggct |
34522688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 4830959 - 4831043
Alignment:
| Q |
171 |
catggccaccaagatcatacacatgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttca |
255 |
Q |
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||||||||||||| || ||||| |||| |||||| |||| |||||| ||||||||||| ||||| ||||||||||||||||| |
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| T |
4830959 |
catggccaccaaggtcctacacctgtaccttttgcagaagagagttccggtcagctcaagctcttggtggtcacatgaatgttca |
4831043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 30726717 - 30726619
Alignment:
| Q |
172 |
atggccaccaagatcatacacatgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttcatagaagggatagagc |
270 |
Q |
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|||||| |||||||| ||| ||||| ||| |||| || |||||||| || |||||||| | || ||||||||||||||||||||||| |||||||| |
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| T |
30726717 |
atggcctccaagatcttactcatgtcacttctgtaaaagagagtttaggtctgctcaagctttaggtggtcacatgaatgttcatagaagagatagagc |
30726619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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