View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19071_high_10 (Length: 255)
Name: NF19071_high_10
Description: NF19071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19071_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 39004992 - 39005232
Alignment:
| Q |
13 |
aatataaaagttccaactaattattaaatgactactaaggctaaacttttaccgtaagtaacattaaatttccaaataagttatatatgtttagctccta |
112 |
Q |
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| T |
39004992 |
aatataaaagttccaactaattattaaatgactactaaggctaaacttttaccgtaagtaacataaaatttccaaataagttatatatgtttagctccta |
39005091 |
T |
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| Q |
113 |
ccaagtttggttcccacaagcacaattggtacagttggagcataatgtctcagttcaggaatccactgcataaaattagctagtgttagattcaattgaa |
212 |
Q |
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| T |
39005092 |
ccaagtttggttcccacaagcacaattggtacagttggagcataatgtctgagttcaggaatccactgcataaaattagctagtgttagattcaattgaa |
39005191 |
T |
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| Q |
213 |
taaaactataccatataaaaattcacaagtgaataaatgtg |
253 |
Q |
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| T |
39005192 |
taaaactataccatataaaaattcacaagtgaataaatgtg |
39005232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 34676933 - 34676875
Alignment:
| Q |
122 |
gttcccacaagcacaattggtacagttggagcataatgtctcagttcaggaatccactg |
180 |
Q |
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| T |
34676933 |
gttcccaccagcacaataggcacatttggagcataatgtctcagctcagatatccactg |
34676875 |
T |
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