View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19071_high_2 (Length: 439)
Name: NF19071_high_2
Description: NF19071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19071_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 199 - 430
Target Start/End: Original strand, 37405919 - 37406150
Alignment:
| Q |
199 |
agtatgctcaaattaattttcaattcagtatagaaccataagtccctgatttgtcgatctaactacagcctaaaaaagcgagaatcagcattaacatacc |
298 |
Q |
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| T |
37405919 |
agtatgctcaaattaattttcaattcagtatagaaccataagtccctgatttgtcgatctaactacagcctaaaaaagcgagaatcagcattaacatacc |
37406018 |
T |
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| Q |
299 |
ttcatgttctcaacacttttctcaagtgatttctgaaagcttccatgataggtagatcaagcctcaaaagaacacaataccatccacacaattatcaagc |
398 |
Q |
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| T |
37406019 |
ttcatgttctcaacacttttctcaagtgatttctgaaagcttccatgataggtagatcaagcctcaaaagaacacaataccatccacacaattatcaagc |
37406118 |
T |
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| Q |
399 |
tgttttagcaactgcactgaaactagtataat |
430 |
Q |
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| T |
37406119 |
tgttttagcaactgcactgaaactagtataat |
37406150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 38 - 171
Target Start/End: Original strand, 37405790 - 37405923
Alignment:
| Q |
38 |
ttgatctgtttagtattatttcattattcctatataattctccaagcaactacttctcaatatgtagactcacaaaagtatatcataataacacacatct |
137 |
Q |
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| T |
37405790 |
ttgatctgtttagtattatttcattattcctatataattctgcaagcaactacttctcaatatgtagactcacaaaagtatatcataataacacacatct |
37405889 |
T |
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| Q |
138 |
aatgcaatagcagtgatatctaacccctaagtat |
171 |
Q |
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| T |
37405890 |
aatgcaatagcagtgatctctaacccctaagtat |
37405923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 37347210 - 37347286
Alignment:
| Q |
38 |
ttgatctgtttagtattatttcattattcctatataattctccaagcaactacttctcaatatgtagactcacaaaa |
114 |
Q |
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| T |
37347210 |
ttgatctttttagtattagttcattattcctagataattctgcaagcaactacttctcaacatgtagattcacaaaa |
37347286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 37347288 - 37347391
Alignment:
| Q |
148 |
cagtgatatctaacccctaagtatttcaatttgatcttaataatacatcacagtatgctcaaattaattttcaattcagtatagaacca-taagtccctg |
246 |
Q |
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|||||||||||||| |||| ||||||||||| || ||||||| |||||| ||| ||| |||||||||||||||||||| |||||||| |||| ||||| |
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| T |
37347288 |
cagtgatatctaactactaaatatttcaattttattataataatgcatcactgtaagcttaaattaattttcaattcagtctagaaccattaagcccctg |
37347387 |
T |
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| Q |
247 |
attt |
250 |
Q |
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|||| |
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| T |
37347388 |
attt |
37347391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 11510611 - 11510540
Alignment:
| Q |
263 |
acagcctaaaaaagcgagaatcagcattaacataccttcatgttctcaacacttttctcaagtgatttctga |
334 |
Q |
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| T |
11510611 |
acagactaaaaaagcaagaactagcattaacatactttcatgttctcaacacttttctcaggtgacttctga |
11510540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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