View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19071_high_4 (Length: 437)
Name: NF19071_high_4
Description: NF19071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19071_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 121 - 426
Target Start/End: Original strand, 32425982 - 32426288
Alignment:
| Q |
121 |
ggtttattcgaaagttaagtgtcatagtttattaaaacagaattgtctgatatacttcattaagtataatagtttattagtnnnnnnntatatttatctg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
32425982 |
ggtttattcgaaagttaagtgtcatagtttattaaaacagaattgtctgatatacttcattaagtatcatagtttattagtaaaaaaatatatttatctg |
32426081 |
T |
|
| Q |
221 |
atacacttcagttgaatagtcgtgagaaatttataatcatcatctttgtgatttgtctcacggaatgtctaactgtcaaccattattaattccattttct |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32426082 |
atacacttcagttgaatagtcgtgagaaatttataatcatcatctttgtgatttgtcttacggaatgtctaactgtcaaccatgattaattccattttct |
32426181 |
T |
|
| Q |
321 |
taactgaaagtgtaaacaaaattttc-nnnnnnntgtgtacagatcatggtcgttgattaatatgaaagagattcaaagtttgatcccgacaattaacac |
419 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32426182 |
taactgaaagtgtaaacaaaattttcaaaaaaaatgtgtacagatcatggtcgttgattaatatgaaagagattcaaagtttgatcccgacaattaacac |
32426281 |
T |
|
| Q |
420 |
aggttct |
426 |
Q |
| |
|
||||||| |
|
|
| T |
32426282 |
aggttct |
32426288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 32425909 - 32425995
Alignment:
| Q |
19 |
tagtttcccttcttcctaatgaatttgcttttcgggtattgaagttcacatttgtgaagttcattgttttgatggtttattcgaaag |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32425909 |
tagtttcccttcttcctaatgaatttgcgtttcgggtattgaagttcacatttgtgaagttcattgttttgatggtttattcgaaag |
32425995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 121 - 288
Target Start/End: Original strand, 1544180 - 1544349
Alignment:
| Q |
121 |
ggtttattcgaaagttaagtgtcatagtttattaaaacagaattgtctgatatacttcattaagtataatagtttattagtnnnnnnntatatttatctg |
220 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
1544180 |
ggtttattcgaaagttaagtgtca--gtttattaaaacaaaattgtctgatacacttcattaagtatcgtagtttattagt-aaaaaatatatttatctg |
1544276 |
T |
|
| Q |
221 |
atacacttcagttgaatagtcgtgagaaatttataatc-----atcatctttgtgatttgtctcacggaatgt |
288 |
Q |
| |
|
| |||||| || |||||||||||||||||| || ||| || ||||||||||||||||| || |||||| |
|
|
| T |
1544277 |
acacacttaagccgaatagtcgtgagaaattcatgatcatgatatgatctttgtgatttgtcttactgaatgt |
1544349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 1544106 - 1544193
Alignment:
| Q |
19 |
tagtttcccttcttcctaatgaatttgcttttcgggtattgaagttcac-atttgtgaagttcattgttttgatggtttattcgaaag |
105 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
1544106 |
tagtttcccttcttcataatgaatttgtgtttcgggtattgaagtttacaatttttgaagttcattattttgatggtttattcgaaag |
1544193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University