View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19071_high_9 (Length: 266)

Name: NF19071_high_9
Description: NF19071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19071_high_9
NF19071_high_9
[»] scaffold0015 (1 HSPs)
scaffold0015 (53-139)||(45333-45419)
[»] chr1 (20 HSPs)
chr1 (47-116)||(42026890-42026959)
chr1 (53-116)||(16801973-16802036)
chr1 (53-116)||(42031698-42031761)
chr1 (47-113)||(17239414-17239480)
chr1 (47-116)||(16802687-16802756)
chr1 (53-112)||(17238597-17238656)
chr1 (47-116)||(34267970-34268039)
chr1 (1-45)||(11830681-11830725)
chr1 (1-45)||(33015386-33015430)
chr1 (1-45)||(15802160-15802204)
chr1 (53-113)||(34269092-34269152)
chr1 (53-113)||(34275327-34275387)
chr1 (3-45)||(10891565-10891607)
chr1 (1-39)||(29152733-29152771)
chr1 (1-45)||(12880235-12880279)
chr1 (1-45)||(13573334-13573378)
chr1 (53-96)||(24790875-24790918)
chr1 (3-43)||(37805538-37805578)
chr1 (53-113)||(48572817-48572877)
chr1 (1-45)||(51161740-51161784)
[»] chr2 (17 HSPs)
chr2 (47-111)||(39240864-39240928)
chr2 (1-49)||(39952066-39952114)
chr2 (53-112)||(18237632-18237691)
chr2 (47-112)||(18236651-18236716)
chr2 (1-45)||(3436342-3436386)
chr2 (48-112)||(32667393-32667457)
chr2 (47-98)||(5483937-5483988)
chr2 (53-116)||(16591531-16591594)
chr2 (53-116)||(18767574-18767637)
chr2 (2-45)||(32919131-32919174)
chr2 (60-98)||(9244251-9244289)
chr2 (47-98)||(9243988-9244039)
chr2 (53-116)||(45631144-45631207)
chr2 (2-45)||(5997812-5997855)
chr2 (2-45)||(9621128-9621171)
chr2 (9-41)||(3331153-3331185)
chr2 (61-93)||(29558160-29558192)
[»] chr8 (27 HSPs)
chr8 (53-116)||(16106029-16106092)
chr8 (53-116)||(16113269-16113332)
chr8 (53-116)||(16101523-16101586)
chr8 (53-134)||(42757606-42757687)
chr8 (53-99)||(30971285-30971331)
chr8 (47-111)||(18573508-18573572)
chr8 (53-113)||(5152461-5152521)
chr8 (47-111)||(23220002-23220066)
chr8 (53-111)||(12836698-12836756)
chr8 (53-99)||(30972028-30972074)
chr8 (47-100)||(1274128-1274181)
chr8 (53-111)||(3743130-3743188)
chr8 (53-111)||(23220888-23220946)
chr8 (1-41)||(2179144-2179184)
chr8 (1-45)||(32178250-32178294)
chr8 (3-45)||(26624139-26624181)
chr8 (58-112)||(42758412-42758466)
chr8 (2-47)||(12177756-12177801)
chr8 (2-47)||(12422184-12422229)
chr8 (81-112)||(37730908-37730939)
chr8 (53-99)||(1636848-1636894)
chr8 (53-99)||(28966540-28966586)
chr8 (8-45)||(5335596-5335633)
chr8 (47-112)||(37731873-37731936)
chr8 (1-45)||(11660522-11660566)
chr8 (1-45)||(11669691-11669735)
chr8 (1-45)||(41844792-41844836)
[»] chr7 (17 HSPs)
chr7 (53-134)||(38887331-38887412)
chr7 (53-116)||(5997616-5997679)
chr7 (53-232)||(47552389-47552567)
chr7 (47-99)||(5995247-5995299)
chr7 (44-116)||(41970879-41970951)
chr7 (57-112)||(1409380-1409435)
chr7 (53-116)||(27268247-27268310)
chr7 (53-99)||(45550998-45551044)
chr7 (53-99)||(45551827-45551873)
chr7 (47-97)||(28778123-28778173)
chr7 (2-47)||(43094824-43094869)
chr7 (1-47)||(17222151-17222197)
chr7 (53-116)||(27258112-27258176)
chr7 (1-45)||(28606834-28606878)
chr7 (10-45)||(22485839-22485874)
chr7 (53-108)||(27875933-27875988)
chr7 (1-47)||(36802740-36802786)
[»] chr4 (30 HSPs)
chr4 (53-115)||(31689177-31689239)
chr4 (47-112)||(31908362-31908427)
chr4 (53-116)||(12206764-12206827)
chr4 (53-116)||(12210923-12210986)
chr4 (47-99)||(23088270-23088322)
chr4 (53-116)||(31914523-31914586)
chr4 (53-116)||(23089275-23089338)
chr4 (53-116)||(31135170-31135233)
chr4 (53-131)||(48314367-48314444)
chr4 (53-98)||(20627527-20627572)
chr4 (1-47)||(37873416-37873462)
chr4 (53-113)||(6311792-6311852)
chr4 (1-46)||(47477519-47477564)
chr4 (48-113)||(48315193-48315258)
chr4 (47-99)||(34837993-34838045)
chr4 (47-116)||(6310813-6310882)
chr4 (2-45)||(24234958-24235001)
chr4 (53-116)||(31135903-31135966)
chr4 (61-116)||(42523890-42523945)
chr4 (3-45)||(3046581-3046623)
chr4 (53-98)||(12921885-12921930)
chr4 (61-115)||(20628344-20628398)
chr4 (57-95)||(34836754-34836792)
chr4 (61-95)||(34978352-34978386)
chr4 (53-99)||(41164190-41164236)
chr4 (59-107)||(8139643-8139691)
chr4 (53-100)||(11791361-11791408)
chr4 (1-45)||(25142353-25142397)
chr4 (65-113)||(42523214-42523262)
chr4 (47-111)||(50432825-50432889)
[»] scaffold0112 (3 HSPs)
scaffold0112 (53-232)||(35003-35181)
scaffold0112 (47-100)||(24722-24775)
scaffold0112 (53-126)||(35789-35861)
[»] chr6 (19 HSPs)
chr6 (47-232)||(28523246-28523430)
chr6 (53-116)||(19237608-19237671)
chr6 (53-116)||(29375048-29375111)
chr6 (53-99)||(8683878-8683924)
chr6 (47-111)||(12441716-12441780)
chr6 (47-99)||(5860544-5860596)
chr6 (40-116)||(17279871-17279947)
chr6 (53-116)||(17280704-17280767)
chr6 (53-116)||(10793584-10793647)
chr6 (53-116)||(28522621-28522684)
chr6 (47-113)||(10792477-10792543)
chr6 (3-48)||(13192778-13192824)
chr6 (1-45)||(30793055-30793099)
chr6 (66-131)||(5860471-5860535)
chr6 (47-92)||(8238063-8238108)
chr6 (53-116)||(7001778-7001841)
chr6 (1-45)||(7793357-7793401)
chr6 (1-45)||(14529239-14529283)
chr6 (9-45)||(20783803-20783839)
[»] scaffold0676 (1 HSPs)
scaffold0676 (59-111)||(3168-3220)
[»] chr3 (31 HSPs)
chr3 (47-99)||(27359857-27359909)
chr3 (55-116)||(17619149-17619210)
chr3 (44-112)||(27473848-27473916)
chr3 (53-116)||(33147332-33147395)
chr3 (53-113)||(54285823-54285883)
chr3 (47-113)||(27317483-27317549)
chr3 (47-117)||(28422849-28422919)
chr3 (1-45)||(20108400-20108444)
chr3 (53-116)||(33148304-33148367)
chr3 (47-111)||(39644534-39644598)
chr3 (53-116)||(4300933-4300996)
chr3 (48-99)||(40929879-40929930)
chr3 (66-116)||(17615035-17615085)
chr3 (53-99)||(29032826-29032872)
chr3 (46-111)||(27474890-27474955)
chr3 (1-45)||(1362853-1362897)
chr3 (53-95)||(51341874-51341916)
chr3 (9-45)||(7719945-7719981)
chr3 (9-45)||(35925006-35925042)
chr3 (2-45)||(30738876-30738919)
chr3 (2-45)||(31681907-31681950)
chr3 (2-45)||(31901036-31901079)
chr3 (2-45)||(31916745-31916788)
chr3 (2-45)||(31950423-31950466)
chr3 (53-95)||(8652110-8652152)
chr3 (2-44)||(18431091-18431133)
chr3 (53-111)||(39645379-39645437)
chr3 (53-97)||(2841230-2841274)
chr3 (58-111)||(8653987-8654040)
chr3 (9-45)||(21696984-21697020)
chr3 (1-45)||(29251452-29251496)
[»] chr5 (11 HSPs)
chr5 (47-99)||(33471159-33471211)
chr5 (1-48)||(10192533-10192580)
chr5 (53-111)||(30667864-30667922)
chr5 (2-45)||(15937064-15937107)
chr5 (53-95)||(22671607-22671648)
chr5 (53-113)||(33471861-33471921)
chr5 (1-45)||(5841257-5841301)
chr5 (9-45)||(32270521-32270557)
chr5 (11-45)||(7861487-7861521)
chr5 (3-45)||(12220149-12220191)
chr5 (3-44)||(394465-394506)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-45)||(116600-116644)


Alignment Details
Target: scaffold0015 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 45333 - 45419
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactttagtcaaaaatacccttacattg 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  45333 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactttagagaaaaatacccttacattg 45419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 42026890 - 42026959
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  42026890 atggggtttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcactt 42026959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 16801973 - 16802036
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  16801973 tttgctacaatagacccactcattttcatgaaggtctattttagcaaggggcaccttttcactt 16802036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 42031761 - 42031698
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  42031761 tttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcactt 42031698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 17239480 - 17239414
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttca 113  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||    
T  17239480 atggggtttgctacaatagacccactcatttttatgaaggtctattttagcaagtagcaccttttca 17239414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 16802756 - 16802687
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||||||||||| | ||||||||||||    
T  16802756 atgggatttgctacaatagacccactcatttttataaaggtctattttagcaagaagtaccttttcactt 16802687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 17238597 - 17238656
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttc 112  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  17238597 tttgctacaatagacccactcatttttatgaaggtctattttagcaagtagcaccttttc 17238656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 34267970 - 34268039
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    ||||| |||||||||||||||||||||  ||| || ||||||||||||||||||   |||||||||||||    
T  34267970 atggggtttgctacaatagacccactccattttatcaaggtctattttagcaagcaacaccttttcactt 34268039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11830681 - 11830725
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||    
T  11830681 taaaatagatttttttagtgtaatatgtttttgttataatttttt 11830725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33015430 - 33015386
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||    
T  33015430 taaaataaatttttgtagtgtaatatgtttttgttagaatttttt 33015386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15802204 - 15802160
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||||    
T  15802204 taaaatagatttttgtagtgtagtatgtttttgttataatttttt 15802160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 34269152 - 34269092
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttca 113  Q
    |||||||||||||||||| ||  ||| |||||||||||||||||||||   ||||||||||    
T  34269152 tttgctacaatagacccattccattttatgaaggtctattttagcaagcaacaccttttca 34269092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 34275387 - 34275327
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttca 113  Q
    |||||||||||||||||| ||  ||| |||||||||||||||||||||   ||||||||||    
T  34275387 tttgctacaatagacccattccattttatgaaggtctattttagcaagcaacaccttttca 34275327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 10891607 - 10891565
Alignment:
Q  3 aaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||| ||||| |||||||||| ||||||||||||||||||||    
T  10891607 aaatagattttgatagtgtaatctgtttttgttataatttttt 10891565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 29152733 - 29152771
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataa 39  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  29152733 taaaatagatttttctagtgtaatatgtttttgttataa 29152771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12880235 - 12880279
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| |||||||||| ||||||| |||||| |||||||||||    
T  12880235 taaaatagatttttatagcgtaatatttttttgctataatttttt 12880279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13573378 - 13573334
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| |||||  ||||||||| ||||||||||||||||||||    
T  13573378 taaaatatattttggtagtgtaatgtgtttttgttataatttttt 13573334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 24790918 - 24790875
Alignment:
Q  53 tttgctacaatagacccact-cattttcatgaaggtctattttag 96  Q
    |||||||||||||||||||| |||||| |||||||||||||||||    
T  24790918 tttgctacaatagacccacttcatttt-atgaaggtctattttag 24790875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 37805578 - 37805538
Alignment:
Q  3 aaataaatttttatagtgtaatatgtttttgttataatttt 43  Q
    ||||| ||||||||||||||| || ||||||||||||||||    
T  37805578 aaatagatttttatagtgtaacatctttttgttataatttt 37805538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 48572877 - 48572817
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttca 113  Q
    |||||||||||||||||||   ||||  | ||||||||||||||||  |||||||||||||    
T  48572877 tttgctacaatagacccacctctttttgttaaggtctattttagcatcatgcaccttttca 48572817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 51161740 - 51161784
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| |||||| ||||||||| || |||||||||||||||||    
T  51161740 taaaatatatttttgtagtgtaatgtgattttgttataatttttt 51161784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 39240928 - 39240864
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcacctttt 111  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39240928 atggggtttgctacaatagacccacccattttcatgaaggtctattttagcaagatgcacctttt 39240864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39952066 - 39952114
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataattttttaatg 49  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  39952066 taaaatagatttttatagtgtaatatgtttttgttatatttttttaatg 39952114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 18237691 - 18237632
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttc 112  Q
    |||| ||||||||||||||||  |||  ||||||||||||||||||||||||||||||||    
T  18237691 tttgttacaatagacccactctattttgtgaaggtctattttagcaagatgcaccttttc 18237632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 18236651 - 18236716
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttc 112  Q
    ||||| ||||||| ||||||||| |||  |||  ||||||||||||||||||||||||||||||||    
T  18236651 atggggtttgctataatagacccgctctattttgtgaaggtctattttagcaagatgcaccttttc 18236716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3436342 - 3436386
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||    
T  3436342 taaaatagatttttctagtgtaatatgtttttgttataatttttt 3436386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 32667457 - 32667393
Alignment:
Q  48 tgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttc 112  Q
    |||| ||||||||||||||||||| | ||||| ||||||||||||||||||| | ||| ||||||    
T  32667457 tggggtttgctacaatagacccaccctttttcttgaaggtctattttagcaaaaagcagcttttc 32667393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 5483988 - 5483937
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagca 98  Q
    ||||| ||||||| |||||||| |||||||||||| ||||||||||||||||    
T  5483988 atgggatttgctataatagaccaactcattttcataaaggtctattttagca 5483937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 16591594 - 16591531
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||||||||||||| | | ||||||||||||||||||||||||    |||||||||||||    
T  16591594 tttgctacaatagacccatttaatttcatgaaggtctattttagcaaccaacaccttttcactt 16591531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 18767637 - 18767574
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    ||||||||||||||| |||||||||| || |||||||||||||||||    |||||||||||||    
T  18767637 tttgctacaatagactcactcatttttataaaggtctattttagcaaccaacaccttttcactt 18767574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 32919174 - 32919131
Alignment:
Q  2 aaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    |||||| |||||| ||||||||||||||||||||||||||||||    
T  32919174 aaaatagatttttgtagtgtaatatgtttttgttataatttttt 32919131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 9244251 - 9244289
Alignment:
Q  60 caatagacccactcattttcatgaaggtctattttagca 98  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  9244251 caatagacccactcatttttatgaaggtctattttagca 9244289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 9243988 - 9244039
Alignment:
Q  47 atgggctttgctacaatagacccac-tcattttcatgaaggtctattttagca 98  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  9243988 atggggtttgctacaatagacccacttcatttt-atgaaggtctattttagca 9244039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 45631207 - 45631144
Alignment:
Q  53 tttgctacaatagacccact-cattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||||||| | ||||||| |||||    
T  45631207 tttgttacaatagacccacttcatttt-atgaaggtctattttagcaagctacacctttacactt 45631144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 5997812 - 5997855
Alignment:
Q  2 aaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    |||||| |||||| ||||||| ||||||||||||||||||||||    
T  5997812 aaaatagatttttgtagtgtattatgtttttgttataatttttt 5997855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 9621171 - 9621128
Alignment:
Q  2 aaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    |||||| |||||| |||||||||||||||||| |||||||||||    
T  9621171 aaaatagatttttgtagtgtaatatgtttttgatataatttttt 9621128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 3331185 - 3331153
Alignment:
Q  9 atttttatagtgtaatatgtttttgttataatt 41  Q
    |||||| ||||||||||||||||||||||||||    
T  3331185 atttttgtagtgtaatatgtttttgttataatt 3331153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 29558160 - 29558192
Alignment:
Q  61 aatagacccactcattttcatgaaggtctattt 93  Q
    |||||||||||||||||| ||||||||||||||    
T  29558160 aatagacccactcatttttatgaaggtctattt 29558192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 16106092 - 16106029
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  16106092 tttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcactt 16106029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 16113332 - 16113269
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  16113332 tttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcactt 16113269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 16101523 - 16101586
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||    
T  16101523 tttgctacaatagacacactcattttcatgaaggtctattttagcaacctgcaccttttcactt 16101586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 42757606 - 42757687
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactttagtcaaaaataccctta 134  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||   ||||| |||||| |||||||    
T  42757606 tttgctacaatagacccactcatttttatgaaggtttattttagcaagctgcaccttttgcttttagacaaaaacaccctta 42757687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 30971285 - 30971331
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30971285 tttgctacaatagacccactcattttcatgaaggtctattttagcaa 30971331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 18573508 - 18573572
Alignment:
Q  47 atgggctttgctacaatagacccactcatttt-catgaaggtctattttagcaagatgcacctttt 111  Q
    ||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  18573508 atggggtttgctacaatagacccac-cattttacatgaaggtctattttagcaagatgcacctttt 18573572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 5152521 - 5152461
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttca 113  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||  |||||||||||    
T  5152521 tttgctacaatagacccgctcatttttatgaaggtctattttagcaagtggcaccttttca 5152461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 23220002 - 23220066
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcacctttt 111  Q
    ||||| ||||||||||||||||||| | |||| ||||||||||||||||||||| ||||||||||    
T  23220002 atggggtttgctacaatagacccacccttttttatgaaggtctattttagcaagctgcacctttt 23220066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 12836698 - 12836756
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcacctttt 111  Q
    |||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||    
T  12836698 tttgctacaatagacccacattttttcatgaaggtctattttagcaaggtgcacctttt 12836756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 30972074 - 30972028
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaa 99  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  30972074 tttgctacaatagacccactcaatttcatgaaggtctattttagcaa 30972028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 1274181 - 1274128
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaag 100  Q
    ||||| |||||||||||||||| ||| |||||||||||||||||||||||||||    
T  1274181 atggggtttgctacaatagaccaacttattttcatgaaggtctattttagcaag 1274128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 3743130 - 3743188
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcacctttt 111  Q
    |||||||||||||| || |||||||| ||||||||||||||||||| ||| ||||||||    
T  3743130 tttgctacaatagatcccctcatttttatgaaggtctattttagcatgattcacctttt 3743188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 23220946 - 23220888
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcacctttt 111  Q
    ||||||||||||||||| | | |||| ||||||||||||||||||||| ||||||||||    
T  23220946 tttgctacaatagaccctcccttttttatgaaggtctattttagcaagctgcacctttt 23220888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2179144 - 2179184
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatt 41  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  2179144 taaaatagatttttatagtgtaatatgtttttgttataatt 2179184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32178250 - 32178294
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  32178250 taaaatagatttttatagtataatatgtttttgttataatttttt 32178294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 26624181 - 26624139
Alignment:
Q  3 aaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||| |||||| ||||||||||||||||||||||||||||||    
T  26624181 aaatagatttttgtagtgtaatatgtttttgttataatttttt 26624139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 42758466 - 42758412
Alignment:
Q  58 tacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttc 112  Q
    |||||||||||||||||||   ||||||||||||||||||||| ||||| |||||    
T  42758466 tacaatagacccactcattaatatgaaggtctattttagcaagctgcacattttc 42758412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 12177756 - 12177801
Alignment:
Q  2 aaaataaatttttatagtgtaatatgtttttgttataattttttaa 47  Q
    |||||| |||||| |||||||| |||||||||||||||||||||||    
T  12177756 aaaatagatttttgtagtgtaaaatgtttttgttataattttttaa 12177801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 12422184 - 12422229
Alignment:
Q  2 aaaataaatttttatagtgtaatatgtttttgttataattttttaa 47  Q
    |||||| |||||| |||||||| |||||||||||||||||||||||    
T  12422184 aaaatagatttttgtagtgtaaaatgtttttgttataattttttaa 12422229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 112
Target Start/End: Original strand, 37730908 - 37730939
Alignment:
Q  81 tgaaggtctattttagcaagatgcaccttttc 112  Q
    ||||||||||||||||||||||||||||||||    
T  37730908 tgaaggtctattttagcaagatgcaccttttc 37730939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 1636848 - 1636894
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaa 99  Q
    ||||||||||||||  ||||||||||||||||| |||||||| ||||    
T  1636848 tttgctacaatagattcactcattttcatgaagatctatttttgcaa 1636894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 28966586 - 28966540
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaa 99  Q
    |||||||||||| ||| ||||||||| |||||| |||||||||||||    
T  28966586 tttgctacaataaaccaactcatttttatgaagttctattttagcaa 28966540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 5335596 - 5335633
Alignment:
Q  8 aatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  5335596 aatttttgtagtgtaatgtgtttttgttataatttttt 5335633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 37731936 - 37731873
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttc 112  Q
    ||||| ||||||||||||||||| || |||||  ||||||| |||||||||||||| |||||||||    
T  37731936 atggggtttgctacaatagaccctct-attttg-tgaaggtgtattttagcaagatacaccttttc 37731873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11660522 - 11660566
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| |||||| || |||||||||||||||||||||| ||||    
T  11660522 taaaatagatttttgtaatgtaatatgtttttgttataatatttt 11660566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11669691 - 11669735
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| |||||| || |||||||||||||||||||||| ||||    
T  11669691 taaaatagatttttgtaatgtaatatgtttttgttataatatttt 11669735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41844792 - 41844836
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| |||||| |||||||| || ||||||||||||||||||    
T  41844792 taaaatagatttttgtagtgtaacatatttttgttataatttttt 41844836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 38887331 - 38887412
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactttagtcaaa-aataccctta 134  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| |||| ||||||||||    
T  38887331 tttgctacaatagactcactcattttcatgaaggtctattttagcaaggtgcacctttt-actttagacaaagaataccctta 38887412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 5997679 - 5997616
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  5997679 tttgctacaatagacccactcattttcatgaaggtctattttagcaaccagcaccttttcactt 5997616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 232
Target Start/End: Complemental strand, 47552567 - 47552389
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactttagtcaaaaa-tacccttacattgnnnnnnngaaaa 151  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||| |||||||||||| ||||||| |||||| |||  |||  |||       || ||    
T  47552567 tttgctacaatagacccaccctttttcatgaagatctattttagcatgatgcacctttt-actttagacaaaaattactattatgttg-ttttttgagaa 47552470  T
Q  152 agacaacactcatggataaaattgt-aattgatgtttaattatttatttttatttctgaattcctgccttttgggtcccact 232  Q
    |||||| | | | |||||||||||| |||||||||||||  |||||||||||||||| ||||| || |||||||||||||||    
T  47552469 agacaaaattaaaggataaaattgtaaattgatgtttaaacatttatttttatttcttaattcatg-cttttgggtcccact 47552389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 5995247 - 5995299
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaa 99  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5995247 atggggtttgctacaatagacccactcattttcatgaaggtctattttagcaa 5995299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 41970879 - 41970951
Alignment:
Q  44 ttaatgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    |||||||||||||    
T  41970879 ttaatggggtttgctacaatagacccactcattttcatgaagatctattttagcaaccaacaccttttcactt 41970951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 1409380 - 1409435
Alignment:
Q  57 ctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttc 112  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  1409380 ctacaatagacccactcatttttatgaaggtctattttagcaaggtgcaccttttc 1409435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 27268310 - 27268247
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||   ||||||||||||||    
T  27268310 tttgatacaatagatccactcattttcatgaaggtctattttagcaatcagcaccttttcactt 27268247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 45550998 - 45551044
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaa 99  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  45550998 tttgctacaatagacccactcaatttcatgaaggtctattttagcaa 45551044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 45551873 - 45551827
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaa 99  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  45551873 tttgctacaatagacccactcaatttcatgaaggtctattttagcaa 45551827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 28778173 - 28778123
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagc 97  Q
    ||||| |||||| |||||||||||||||||||||| |||||||||||||||    
T  28778173 atgggttttgcttcaatagacccactcattttcatcaaggtctattttagc 28778123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 43094869 - 43094824
Alignment:
Q  2 aaaataaatttttatagtgtaatatgtttttgttataattttttaa 47  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||    
T  43094869 aaaatagatttttgtagtgtaatatgtttttgttataattttttaa 43094824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17222197 - 17222151
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataattttttaa 47  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||||    
T  17222197 taaaatagatttttgttgtgtaatatgtttttgttataattttttaa 17222151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 27258176 - 27258112
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaa-ggtctattttagcaagatgcaccttttcactt 116  Q
    |||||| ||||||| ||||||||||||||||| |||||||||||||||    |||||||||||||    
T  27258176 tttgctgcaatagatccactcattttcatgaagggtctattttagcaatcaacaccttttcactt 27258112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28606878 - 28606834
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| |||||| |||||||| |||||||||||||||||||||    
T  28606878 taaaatagatttttgtagtgtaaaatgtttttgttataatttttt 28606834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 22485874 - 22485839
Alignment:
Q  10 tttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||| ||||||||||||||||||||||||||||||    
T  22485874 tttttgtagtgtaatatgtttttgttataatttttt 22485839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 27875933 - 27875988
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcacct 108  Q
    |||||||||||||| || |   |||||||||||||||||||||||||| |||||||    
T  27875933 tttgctacaatagatccgccttttttcatgaaggtctattttagcaaggtgcacct 27875988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36802740 - 36802786
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataattttttaa 47  Q
    |||||||  |||||||| |||||||| ||||||||||||||||||||    
T  36802740 taaaataggtttttataatgtaatatatttttgttataattttttaa 36802786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 31689177 - 31689239
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcact 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  31689177 tttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcact 31689239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 31908427 - 31908362
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttc 112  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  31908427 atggggtttgctacaatagacccactcatttttatgaaggtctattttagcaagttgcaccttttc 31908362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 12206764 - 12206827
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||    
T  12206764 tttgctacaatagacccactcatttttatgaaggtctattttagcaacctgcaccttttcactt 12206827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 12210986 - 12210923
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||    
T  12210986 tttgctacaatagaccaactcattttcatgaaggtctattttagcaacctgcaccttttcactt 12210923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 23088270 - 23088322
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaa 99  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23088270 atggggtttgctacaatagacccactcattttcatgaaggtctattttagcaa 23088322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 31914523 - 31914586
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||    
T  31914523 tttgctacaatagacccactcattttcatgaagatctattttagcaaccagcaccttttcactt 31914586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 23089338 - 23089275
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    |||||||||||||    
T  23089338 tttgctacaatagacccactcattttcatgtaggtctattttagcaaccaacaccttttcactt 23089275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 31135170 - 31135233
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    |||||||||||||    
T  31135170 tttgctacaatagaccaactcattttcatgaaggtctattttagcaaccaacaccttttcactt 31135233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 48314367 - 48314444
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactttagtcaaaaataccc 131  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||   |||||||||| ||||| | |||||||||    
T  48314367 tttgctgcaatagacccactcattttcatgaaagtctattttagcaagcaacaccttttca-tttagactaaaataccc 48314444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 20627527 - 20627572
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagca 98  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  20627527 tttgctacaatagacccactcattttcatgaaagtctattttagca 20627572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37873416 - 37873462
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataattttttaa 47  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||    
T  37873416 taaaataaattttgatagtgtaatgtgtttttgttataattttttaa 37873462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 6311852 - 6311792
Alignment:
Q  53 tttgctacaatagacccac-tcattttcatgaaggtctattttagcaagatgcaccttttca 113  Q
    ||||||| ||||||||||| |||||| |||||||||||||||||||||| ||||||||||||    
T  6311852 tttgctataatagacccacctcattt-catgaaggtctattttagcaaggtgcaccttttca 6311792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 47477564 - 47477519
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttta 46  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||    
T  47477564 taaaataaatttttgtagtgtaatatgtttttgttataattcttta 47477519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 48315258 - 48315193
Alignment:
Q  48 tgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttca 113  Q
    |||| |||||||||||||||||||| |||||||| ||||| ||||||||||||   ||||||||||    
T  48315258 tgggatttgctacaatagacccacttattttcataaaggtttattttagcaagcaacaccttttca 48315193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 34838045 - 34837993
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaa 99  Q
    ||||| |||||||||||||||||||||||||| |||||| | |||||||||||    
T  34838045 atggggtttgctacaatagacccactcatttttatgaagttttattttagcaa 34837993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 6310813 - 6310882
Alignment:
Q  47 atgggctttgctacaatagacccac-tcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    ||||| ||| |||||||||| |||| |||||| |||||||||||||||||| ||| |||||||||||||||    
T  6310813 atggggtttactacaatagatccacctcattt-catgaaggtctattttaggaaggtgcaccttttcactt 6310882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 24235001 - 24234958
Alignment:
Q  2 aaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    |||||| |||||| || |||||||||||||||||||||||||||    
T  24235001 aaaatagatttttgtattgtaatatgtttttgttataatttttt 24234958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 31135966 - 31135903
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||||||||| ||| ||| |||||||||||| |||||||||||    |||||||||||||    
T  31135966 tttgctacaatagatccattcaatttcatgaaggtgtattttagcaaccaacaccttttcactt 31135903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 42523945 - 42523890
Alignment:
Q  61 aatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    ||||||| |||||||||||||||| |||| ||||||||||   |||||||||||||    
T  42523945 aatagactcactcattttcatgaaagtctgttttagcaagtaacaccttttcactt 42523890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 3046623 - 3046581
Alignment:
Q  3 aaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||| |||||||||||||||||| |||||| |||||||||||    
T  3046623 aaatagatttttatagtgtaatatctttttgctataatttttt 3046581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 12921930 - 12921885
Alignment:
Q  53 tttgctacaatagacccact-cattttcatgaaggtctattttagca 98  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||    
T  12921930 tttgctacaatagacccacttcatttt-atgaaggtctattttagca 12921885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 20628398 - 20628344
Alignment:
Q  61 aatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcact 115  Q
    ||||||||||| |||||| |||||||||||||||| ||||   ||||||||||||    
T  20628398 aatagacccacccatttttatgaaggtctattttaccaagcaacaccttttcact 20628344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 34836754 - 34836792
Alignment:
Q  57 ctacaatagacccactcattttcatgaaggtctatttta 95  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  34836754 ctacaatagacccacttatttttatgaaggtctatttta 34836792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 34978352 - 34978386
Alignment:
Q  61 aatagacccactcattttcatgaaggtctatttta 95  Q
    |||||||||||||||||| ||||||||||||||||    
T  34978352 aatagacccactcatttttatgaaggtctatttta 34978386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 41164236 - 41164190
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaa 99  Q
    ||||||||| |||||||| ||||||| ||||| ||||||||||||||    
T  41164236 tttgctacagtagacccattcatttttatgaaagtctattttagcaa 41164190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 8139691 - 8139643
Alignment:
Q  59 acaatagacccactcattttcatgaaggtctattttagcaagatgcacc 107  Q
    |||||||| ||||| ||||| ||||| |||||||||| |||||||||||    
T  8139691 acaatagatccacttatttttatgaatgtctattttaacaagatgcacc 8139643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 11791361 - 11791408
Alignment:
Q  53 tttgctacaatagacccac-tcattttcatgaaggtctattttagcaag 100  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||||||    
T  11791361 tttgctacaatagacccacttcatttt-atgaatgtctattttagcaag 11791408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25142397 - 25142353
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| |||||| ||||| |||||| |||||||||||||||||    
T  25142397 taaaatatatttttgtagtggaatatgcttttgttataatttttt 25142353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 42523214 - 42523262
Alignment:
Q  65 gacccactcattttcatgaaggtctattttagcaagatgcaccttttca 113  Q
    |||||||||||||| |||||||||| ||||||||||   ||||||||||    
T  42523214 gacccactcatttttatgaaggtctcttttagcaagtaacaccttttca 42523262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 50432889 - 50432825
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcacctttt 111  Q
    ||||| |||| || |||||||||||   |||| ||||||||| ||||||||||| ||||||||||    
T  50432889 atggggtttgttataatagacccacatctttttatgaaggtccattttagcaagctgcacctttt 50432825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 232
Target Start/End: Original strand, 35003 - 35181
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactttagtc-aaaaatacccttacattgnnnnnnngaaaa 151  Q
    |||||||||||||||||||   |||||||||||||||||||||||| |||||||||||| ||||||  | ||||||||| |||  |||       || ||    
T  35003 tttgctacaatagacccaccttttttcatgaaggtctattttagcatgatgcacctttt-actttaaacaaaaaatacctttatgttg-ttttctgagaa 35100  T
Q  152 agacaacactcatggataaaattgt-aattgatgtttaattatttatttttatttctgaattcctgccttttgggtcccact 232  Q
    |||||| | | | |||||||||||| |||||||||||||  |||||||||||||||| ||||| || |||||||||||||||    
T  35101 agacaaaattaaaggataaaattgtaaattgatgtttaaacatttatttttatttcttaattcatg-cttttgggtcccact 35181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 24722 - 24775
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaag 100  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  24722 atgggttttgctacaatagacccactcattttcatgaagttctattttaacaag 24775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 35861 - 35789
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactttagtcaaaaa 126  Q
    ||||||||||||||||| |   |||||||||||||||||||||||| |||| ||||||| ||||||| ||||||    
T  35861 tttgctacaatagacccgccttttttcatgaaggtctattttagcatgatgtacctttt-actttagacaaaaa 35789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 232
Target Start/End: Complemental strand, 28523430 - 28523246
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactttagtcaa-aaatacccttacattgnnnnnn 145  Q
    ||||| |||||| ||||||||||| ||  |||  ||||||||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||          
T  28523430 atggggtttgctgcaatagacccattctattttgtgaaggtctattttagcaagatgcacctttt-actttagacaagaaatacccctacattg-ttttt 28523333  T
Q  146 ngaaaaagacaacactcatggataaaattgt-aattgatgtttaattatttatttttatttctgaattcctgccttttgggtcccact 232  Q
     ||||||||||    | | |||||||| ||| ||||| ||||||| ||||||||||||||||| |||| ||| |||||||||||||||    
T  28523332 tgaaaaagacatgtatgaaggataaaagtgtaaattgctgtttaaatatttatttttatttcttaatttctg-cttttgggtcccact 28523246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 19237671 - 19237608
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  19237671 tttgctacaatagacccactcattttcatgaaggtctattttagcaaccaacaccttttcactt 19237608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 29375111 - 29375048
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||  ||||||||||||||    
T  29375111 tttgctacaatagatccactcattttcatgaaggtccattttagcaaggagcaccttttcactt 29375048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 8683924 - 8683878
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8683924 tttgctacaatagacccactcattttcatgaaggtctattttagcaa 8683878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 12441780 - 12441716
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcacctttt 111  Q
    ||||| |||||||||||||||||||   |||||||||||||| ||||||||||||||||||||||    
T  12441780 atgggatttgctacaatagacccacctcttttcatgaaggtccattttagcaagatgcacctttt 12441716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 5860544 - 5860596
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaa 99  Q
    ||||| |||||||||||||||||||||||||| |||||||| |||||||||||    
T  5860544 atggggtttgctacaatagacccactcatttttatgaaggtgtattttagcaa 5860596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 17279871 - 17279947
Alignment:
Q  40 ttttttaatgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||| ||| |||||||||||||||| | ||||||| ||||||||||||||||||||   ||||||||| ||||    
T  17279871 ttttttaaaggggtttgctacaatagacctattcatttttatgaaggtctattttagcaaccagcacctttttactt 17279947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 17280767 - 17280704
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||    |||||||||||||    
T  17280767 tttgctacaattgacccactcattttcattaaggtctattttagcaaccaacaccttttcactt 17280704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 10793647 - 10793584
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||||||||||||||||  ||| || ||||||||||||||||||   |||||||||||||    
T  10793647 tttgctacaatagacccactccattttatcaaggtctattttagcaagcaacaccttttcactt 10793584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 28522621 - 28522684
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||||||||||||||||  |||  ||||| |||||||||||| |||||||||||| ||||    
T  28522621 tttgctacaatagacccactctattttgtgaagctctattttagcaggatgcaccttttgactt 28522684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 10792477 - 10792543
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttca 113  Q
    ||||| |||||||||||||||||| ||  ||| |||||||||||||||||||||   ||||||||||    
T  10792477 atggggtttgctacaatagacccattccattttatgaaggtctattttagcaagcaacaccttttca 10792543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 13192778 - 13192824
Alignment:
Q  3 aaataaatttttatagtgtaatatgtttttgtta-taattttttaat 48  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  13192778 aaatagatttttatagtgtaatatgtttttgttattaattttttaat 13192824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30793099 - 30793055
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||||    
T  30793099 taaaatagatttttgtagtgtaatatatttttgttataatttttt 30793055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 5860535 - 5860471
Alignment:
Q  66 acccactcattttcatgaaggtctattttagcaagatgcaccttttcactttagtcaaaaataccc 131  Q
    ||||| ||||||||||||| |||||||||||||   |||||||||| ||||||| || ||||||||    
T  5860535 acccagtcattttcatgaaagtctattttagcatcgtgcacctttt-actttagacataaataccc 5860471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 8238063 - 8238108
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctatt 92  Q
    ||||| ||||||||||||||| |||||||||| ||||| |||||||    
T  8238063 atggggtttgctacaatagactcactcatttttatgaaagtctatt 8238108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 7001841 - 7001778
Alignment:
Q  53 tttgctacaatagacccact-cattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||| ||||||||||||| |||||| ||||||||||||||||||| |   |||||||||||||    
T  7001841 tttgctgcaatagacccacttcatttt-atgaaggtctattttagcatgcaacaccttttcactt 7001778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7793401 - 7793357
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| |||||||||||||||||| |||||| || ||||||||    
T  7793401 taaaatagatttttatagtgtaatatctttttgctacaatttttt 7793357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 14529283 - 14529239
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| |||||| |||||| |||||||||||||||| ||||||    
T  14529283 taaaatagatttttgtagtgtgatatgtttttgttatattttttt 14529239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 20783803 - 20783839
Alignment:
Q  9 atttttatagtgtaatatgtttttgttataatttttt 45  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  20783803 atttttgtagtgtaatatgtttttgttataatatttt 20783839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 3168 - 3220
Alignment:
Q  59 acaatagacccactcattttcatgaaggtctattttagcaagatgcacctttt 111  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3168 acaatagacccgctcattttcatgaaggtctattttagcaagatgcacctttt 3220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 27359909 - 27359857
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaa 99  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27359909 atggggtttgctacaatagacccactcattttcatgaaggtctattttagcaa 27359857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 17619210 - 17619149
Alignment:
Q  55 tgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||   | ||||||||||||    
T  17619210 tgctacaatagacccactcattttcatgaaggtctattttagcaaccagtaccttttcactt 17619149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 27473848 - 27473916
Alignment:
Q  44 ttaatgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttc 112  Q
    |||| ||| |||||||||||||||||||||  |||  ||||||||||||||||||||||||||||||||    
T  27473848 ttaaaggggtttgctacaatagacccactctattttgtgaaggtctattttagcaagatgcaccttttc 27473916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 33147332 - 33147395
Alignment:
Q  53 tttgctacaatagacccac-tcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||    
T  33147332 tttgctacaatagacccacctcattt-catgaagatctattttagcaagatgcaccttttcactt 33147395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 54285883 - 54285823
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttca 113  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||  | ||||||||||    
T  54285883 tttgctacaatagacccactcatttttatgaaggtctattttagcaacctacaccttttca 54285823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 27317549 - 27317483
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttca 113  Q
    ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||   ||||||||||    
T  27317549 atggggtttgctacaatagacccgctcattttcatgaaggtttattttagcaagcaacaccttttca 27317483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 28422919 - 28422849
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcacttt 117  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||    ||||||||||||||    
T  28422919 atggggtttgctacaatagacccactcatttttatgaaagtctattttagcaaccatcaccttttcacttt 28422849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20108444 - 20108400
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  20108444 taaaatatatttttatagtgtaatatgtttttgttataatttttt 20108400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 33148367 - 33148304
Alignment:
Q  53 tttgctacaatagacccac-tcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||||||||||||    
T  33148367 tttgctacaataaacccacctcatttt-atgaaggtctattttagcaaggtgcaccttttcactt 33148304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 39644534 - 39644598
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcacctttt 111  Q
    ||||| |||||||||||||||||||   |||||||||||||| ||||||||||| ||||||||||    
T  39644534 atgggttttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 39644598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 4300933 - 4300996
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||    |||||||||||||    
T  4300933 tttgctacaatagacccacttattttcatgaagatctattttagcaaccaacaccttttcactt 4300996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 40929930 - 40929879
Alignment:
Q  48 tgggctttgctacaatagacccactcattttcatgaaggtctattttagcaa 99  Q
    |||| |||||||||||||||||||||||||| |||||||| |||||||||||    
T  40929930 tggggtttgctacaatagacccactcatttttatgaaggtttattttagcaa 40929879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 17615035 - 17615085
Alignment:
Q  66 acccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 116  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||||||    
T  17615035 acccactcatttttatgaaggtctattttagcaacttgcaccttttcactt 17615085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 29032872 - 29032826
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaa 99  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||    
T  29032872 tttgctacaatagacccattcatttttatgaaggtctattttagcaa 29032826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 27474955 - 27474890
Alignment:
Q  46 aatgggctttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcacctttt 111  Q
    |||||| |||||||||||||||||||||  |||  |||| ||||||||||||||||| ||||||||    
T  27474955 aatggggtttgctacaatagacccactctattttgtgaacgtctattttagcaagatacacctttt 27474890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1362853 - 1362897
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    |||||||||||||| || |||||||||||||||||||||||||||    
T  1362853 taaaataaatttttgtaatgtaatatgtttttgttataatttttt 1362897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 51341874 - 51341916
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctatttta 95  Q
    |||||||||||||||| ||||||| ||||||||||||||||||    
T  51341874 tttgctacaatagacctactcattctcatgaaggtctatttta 51341916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 7719981 - 7719945
Alignment:
Q  9 atttttatagtgtaatatgtttttgttataatttttt 45  Q
    |||||| ||||||||||||||||||||||||||||||    
T  7719981 atttttgtagtgtaatatgtttttgttataatttttt 7719945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 35925042 - 35925006
Alignment:
Q  9 atttttatagtgtaatatgtttttgttataatttttt 45  Q
    |||||| ||||||||||||||||||||||||||||||    
T  35925042 atttttgtagtgtaatatgtttttgttataatttttt 35925006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 30738919 - 30738876
Alignment:
Q  2 aaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    |||||| |||||| || |||||||||||||||||||||||||||    
T  30738919 aaaatagatttttgtaatgtaatatgtttttgttataatttttt 30738876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 31681950 - 31681907
Alignment:
Q  2 aaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    |||||| |||||  ||||||||||||||||||||||||||||||    
T  31681950 aaaatagattttggtagtgtaatatgtttttgttataatttttt 31681907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 31901036 - 31901079
Alignment:
Q  2 aaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    |||||| |||||  ||||||||||||||||||||||||||||||    
T  31901036 aaaatagattttggtagtgtaatatgtttttgttataatttttt 31901079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 31916745 - 31916788
Alignment:
Q  2 aaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    |||||| |||||  ||||||||||||||||||||||||||||||    
T  31916745 aaaatagattttggtagtgtaatatgtttttgttataatttttt 31916788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 31950423 - 31950466
Alignment:
Q  2 aaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    |||||| |||||  ||||||||||||||||||||||||||||||    
T  31950423 aaaatagattttggtagtgtaatatgtttttgttataatttttt 31950466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 8652110 - 8652152
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctatttta 95  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  8652110 tttgctacaatagacccacctcttttcatgaaggtctatttta 8652152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 18431133 - 18431091
Alignment:
Q  2 aaaataaatttttatagtgtaatatgtttttgttataattttt 44  Q
    |||||| |||||| || ||||||||||||||||||||||||||    
T  18431133 aaaatagatttttgtattgtaatatgtttttgttataattttt 18431091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 39645437 - 39645379
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcacctttt 111  Q
    |||||||||||||||||||   |||| ||||||||| ||||||||||| || |||||||    
T  39645437 tttgctacaatagacccacctctttttatgaaggtccattttagcaagctgtacctttt 39645379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 2841274 - 2841230
Alignment:
Q  53 tttgctacaatagacccact-cattttcatgaaggtctattttagc 97  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||    
T  2841274 tttgctacaatagacccacttcatttt-atgaaggtctattttagc 2841230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 8654040 - 8653987
Alignment:
Q  58 tacaatagacccactcattttcatgaaggtctattttagcaagatgcacctttt 111  Q
    ||||||||||||||  |||||||||||||| ||||||| |||  ||||||||||    
T  8654040 tacaatagacccacctattttcatgaaggtttattttaacaaagtgcacctttt 8653987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 21697020 - 21696984
Alignment:
Q  9 atttttatagtgtaatatgtttttgttataatttttt 45  Q
    |||||| || |||||||||||||||||||||||||||    
T  21697020 atttttgtaatgtaatatgtttttgttataatttttt 21696984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29251496 - 29251452
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| ||||||||| |||||||| |||| |||||||||||||    
T  29251496 taaaatagatttttataatgtaatatcttttagttataatttttt 29251452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 33471159 - 33471211
Alignment:
Q  47 atgggctttgctacaatagacccactcattttcatgaaggtctattttagcaa 99  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  33471159 atggggtttgctacaatagacccattcattttcatgaaggtctattttagcaa 33471211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10192533 - 10192580
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataattttttaat 48  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10192533 taaaataaatttttatagtgtaatatgtttttgttataaatttttaat 10192580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 30667864 - 30667922
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcacctttt 111  Q
    |||||||||||||||||||   ||||||||||||| |||||||||||| ||||||||||    
T  30667864 tttgctacaatagacccaccttttttcatgaaggtatattttagcaaggtgcacctttt 30667922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 15937107 - 15937064
Alignment:
Q  2 aaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  15937107 aaaataaatttttgtagtgtattatgtttttgttataatttttt 15937064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 22671607 - 22671648
Alignment:
Q  53 tttgctacaatagacccactcattttcatgaaggtctatttta 95  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  22671607 tttgctacaat-gacccactcattttcatgaaggtctatttta 22671648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 33471921 - 33471861
Alignment:
Q  53 tttgctacaatagacccact-cattttcatgaaggtctattttagcaagatgcaccttttca 113  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||   |||||||||||    
T  33471921 tttgctacaatagacccacttcatttt-atgaaggtctattttagcaactagcaccttttca 33471861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5841257 - 5841301
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||    
T  5841257 taaaatagattttggtagtgtaatatgtttttgttataatttttt 5841301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 32270557 - 32270521
Alignment:
Q  9 atttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||| |||||||||||||||||||||||||||||||    
T  32270557 attttcatagtgtaatatgtttttgttataatttttt 32270521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 7861521 - 7861487
Alignment:
Q  11 ttttatagtgtaatatgtttttgttataatttttt 45  Q
    |||| ||||||||||||||||||||||||||||||    
T  7861521 ttttgtagtgtaatatgtttttgttataatttttt 7861487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 12220149 - 12220191
Alignment:
Q  3 aaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||| ||||| |||||||||| ||||||||||||||||||||    
T  12220149 aaatatattttgatagtgtaatgtgtttttgttataatttttt 12220191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 394506 - 394465
Alignment:
Q  3 aaataaatttttatagtgtaatatgtttttgttataattttt 44  Q
    ||||| |||||| ||||| |||||||||||||||||||||||    
T  394506 aaatagatttttgtagtgcaatatgtttttgttataattttt 394465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 116600 - 116644
Alignment:
Q  1 taaaataaatttttatagtgtaatatgtttttgttataatttttt 45  Q
    ||||||| |||||  ||||||||| ||||||||||||||||||||    
T  116600 taaaatagattttggtagtgtaatgtgtttttgttataatttttt 116644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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