View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19071_low_1 (Length: 761)
Name: NF19071_low_1
Description: NF19071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19071_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 656; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 6 - 744
Target Start/End: Complemental strand, 49426632 - 49425892
Alignment:
| Q |
6 |
gtcgaagaatattgggaggacccaatatctgttcctcattgtctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagc |
105 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49426632 |
gtcgaagaaaattgggaggacccaatatctgttcctcattgtctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagc |
49426533 |
T |
|
| Q |
106 |
ttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagagagttattattatg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
49426532 |
ttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagaactcaaaacatatagagagttattattatg |
49426433 |
T |
|
| Q |
206 |
cccaagggcctcccctatatgtgaagttgtgatcgattgcaagcaaggttctatgtaagtagcagttcttctattcacttctactttgcaactgttaggt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49426432 |
cccaagggcctcccctatatgtgaagttgtgatcgattgcaagcgaggttctatgtaagtagcagttcttctattcacttctactttgcaactgttaggt |
49426333 |
T |
|
| Q |
306 |
ttgatggtttgaatagtgaaccttgatgctcttgtattttgtatcagttcacaagtttaagaaaaattatcctttaactttagaccnnnnnnnnnnactt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
49426332 |
ttgatggtttgaatagtgaaccttgatgctcttgaattttgtatcagttcacaagtttaagaaaaattatcctttaactttagaccttttttttttactt |
49426233 |
T |
|
| Q |
406 |
gttcattacttcaacaaaatctatgttatcca--nnnnnnnngttagttgtttgctaaattctgattccatgaatgaccacatgataggagagtaaaatg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49426232 |
gttcattacttcaacaaaatctatgttatccattttttttttgttagttgtatgctaaattctgattccatgaatgaccacatgataggagagtaaaatg |
49426133 |
T |
|
| Q |
504 |
tgtgagaactgagaactgacttctaaaatgtctgataagttttgaaaaatactgctatgagaatgagaagggagcttttgaactgtcttaatgaatcatt |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49426132 |
tgtgagaactgagaactgacttctaaaatgtctgataagttttgaaaaatactgctatgagaatgagaagggagcttttgaactgtcttaatgaatcatt |
49426033 |
T |
|
| Q |
604 |
tggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaactaaatgtatgagatggttcatagtttcaactttcaagacattagggat |
703 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49426032 |
tggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaactaaatgtatgagatggttcatagtttcaactttcaagacattagggat |
49425933 |
T |
|
| Q |
704 |
agcatttcttacgctcttaagatttcgccaattcatattgg |
744 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49425932 |
agcatttcttacgctcttaagatttcgccaattcatattgg |
49425892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 91 - 379
Target Start/End: Complemental strand, 49432788 - 49432497
Alignment:
| Q |
91 |
gccaagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatag |
190 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| || ||| || || |
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|
| T |
49432788 |
gccaagaaagtgagcttctattggcaagatatattctaaagaattcaagagttttgtaaaccatgaaaatccattgtggtaaagacttcgaaatattaag |
49432689 |
T |
|
| Q |
191 |
agagttattattatgcccaagggcctcccctatatgtgaagttgtgatcgattgcaagc-aaggttctatgtaag--tagcagttcttctattcacttct |
287 |
Q |
| |
|
||||||| | ||||||| ||||| || ||||||||||||||| | | ||| | || || ||||||||| |||||||||||||||| |||||| |
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|
| T |
49432688 |
agagttactcttatgccatagggcttctcctatatgtgaagttattacttattaaatgcaaacagcctatgtaagtatagcagttcttctattaacttct |
49432589 |
T |
|
| Q |
288 |
actttgcaactgttaggtttgatggtttgaatagtgaaccttgatgctcttgtattttgtatcagttcacaagtttaagaaaaattatcctt |
379 |
Q |
| |
|
||||||||||||||||||| || |||||| | ||||||||||||| ||||| | |||||||| || ||||||| | |||||||||||||| |
|
|
| T |
49432588 |
actttgcaactgttaggttcgacagtttgagttgtgaaccttgatgttcttgaactttgtatcggtgcacaagtccaggaaaaattatcctt |
49432497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 561 - 729
Target Start/End: Original strand, 43363144 - 43363309
Alignment:
| Q |
561 |
tgagaatgagaagggagcttttgaactgtcttaatgaatcatttggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaactaaat |
660 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||||| |||||||||||| |||||| || ||||| |||||| ||||||| | |||||||||| || |
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|
| T |
43363144 |
tgagaatgagaaggaagtttttgaattgtcttaatgagtcatttggggaagcttgtttagtgtttcacttcaattgttcaacaaccagtttaaact--at |
43363241 |
T |
|
| Q |
661 |
gtatgagatggttcatagtttcaactttcaagacattagggatagcatttcttacgctcttaagatttc |
729 |
Q |
| |
|
||| |||||| || |||| ||||||||||||||||| ||||||| ||||| ||| ||||||||| |||| |
|
|
| T |
43363242 |
gtaggagatgattaatagattcaactttcaagacataagggataacattt-ttatgctcttaagctttc |
43363309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 576 - 719
Target Start/End: Complemental strand, 49423904 - 49423761
Alignment:
| Q |
576 |
agcttttgaactgtcttaatgaatcatttggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaactaaatgtatgagatggttca |
675 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| ||||||||| ||| |||||||| ||||||||| | |||||||| || || ||||||||| | |
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|
| T |
49423904 |
agcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagttggagatggttga |
49423805 |
T |
|
| Q |
676 |
tagtttcaactttcaagacattagggatagcatttcttacgctc |
719 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
49423804 |
tagattcaactttcaagacattagggataacattttttatgctc |
49423761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 17641281 - 17641083
Alignment:
| Q |
10 |
aagaatattgggaggacccaatatctgttcctcattgtctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagcttct |
109 |
Q |
| |
|
||||| |||||| ||||||||||| |||||| || ||| |||||||| | ||| ||| |||| | || | || ||| | ||||||||| | |||||||| |
|
|
| T |
17641281 |
aagaaaattgggtggacccaatatttgttccgcaatgtttttcattacaccttaaaatttgcaaagttctaaacttcataggccaagaaggcgagcttct |
17641182 |
T |
|
| Q |
110 |
attggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagagagttattattatgccc |
208 |
Q |
| |
|
|||||||| | | ||||| |||||||||| ||||||||||||||||||||| |||| || |||| ||||||| | | ||||||||||| || ||||| |
|
|
| T |
17641181 |
attggcaagaaacattctgaagaatgcaaaagttttgcaaaccatgaaaatacattgcagtgaagacctcaaaatagaaagagagttattcttgtgccc |
17641083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 49415963 - 49416098
Alignment:
| Q |
25 |
acccaatatctgttcctcattgtctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagcttctattggcaaaacatat |
124 |
Q |
| |
|
||||||||| |||||| || ||||||||||| ||||| |||||||| | || |||| ||||| ||| ||||| | |||||||||||||||| | | || |
|
|
| T |
49415963 |
acccaatatttgttccacaaagtctttcattacaacttaaaacttgcaaacttctgaacttcttaggcgaagaaggcgagcttctattggcaagatacat |
49416062 |
T |
|
| Q |
125 |
tctaaagaatgcaagagttttgcaaaccatgaaaat |
160 |
Q |
| |
|
| | |||||||| ||||||||||||||||||||||| |
|
|
| T |
49416063 |
tttgaagaatgctagagttttgcaaaccatgaaaat |
49416098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 504 - 585
Target Start/End: Original strand, 49416720 - 49416802
Alignment:
| Q |
504 |
tgtgagaactgagaactgacttctaaaatgtctgataa-gttttgaaaaatactgctatgagaatgagaagggagcttttgaa |
585 |
Q |
| |
|
||||||||||||| ||| |||||||| | |||| |||| ||||| ||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
49416720 |
tgtgagaactgagtactcacttctaataagtctaataaagttttaaaaaatactgcaatgagaatgacaagggagcttttgaa |
49416802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 49445393 - 49445331
Alignment:
| Q |
100 |
gtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatca |
162 |
Q |
| |
|
|||||||||| |||||||| ||||| | |||||||||||||||||||||||||||| ||||| |
|
|
| T |
49445393 |
gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca |
49445331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 43362340 - 43362472
Alignment:
| Q |
100 |
gtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagagagttatt |
199 |
Q |
| |
|
|||||||| ||||||||| | ||||| | ||||||||||||||||||| ||||||| ||||| |||| || | || |||||| | | ||||| || | |
|
|
| T |
43362340 |
gtgagcttttattggcaatatatattgtgaagaatgcaagagttttgc-aaccatggaaatctattgcagtgacgaactcaaactagaaagagaattgtc |
43362438 |
T |
|
| Q |
200 |
attatgcccaagggcctcccctatatgtgaagtt |
233 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||| |
|
|
| T |
43362439 |
cttatgtccaagggcctctcctacatgtgaagtt |
43362472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 704
Target Start/End: Complemental strand, 17641049 - 17640994
Alignment:
| Q |
649 |
tttaaactaaatgtatgagatggttcatagtttcaactttcaagacattagggata |
704 |
Q |
| |
|
||||||||||||||| || |||||| |||| |||||||||||||| ||||||||| |
|
|
| T |
17641049 |
tttaaactaaatgtaggacatggttgatagattcaactttcaagaatttagggata |
17640994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 48 - 214
Target Start/End: Original strand, 1965543 - 1965709
Alignment:
| Q |
48 |
ctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgc |
147 |
Q |
| |
|
||||||||| ||||| |||||||| |||| | || ||||| |||||||||||||||||||| ||||||| | |||||||||||||| ||| |||||||| |
|
|
| T |
1965543 |
ctttcattacaacttaaaacttgccaaattcttaatttctttggccaagaaagtgagcttcttttggcaagatatattctaaagaatacaaaagttttgc |
1965642 |
T |
|
| Q |
148 |
aaaccatgaaaatcaattgtggtaaagagctcaaaacatatagagagttattattatgcccaagggc |
214 |
Q |
| |
|
|||||||||||||| |||||||| |||| |||||| || ||||||||| | ||||||| |||||| |
|
|
| T |
1965643 |
aaaccatgaaaatcgattgtggtgaagacttcaaaatattaagagagttactcttatgccaaagggc |
1965709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 25457808 - 25457687
Alignment:
| Q |
93 |
caagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagag |
192 |
Q |
| |
|
||||||||||||| ||| ||||||| | |||||||||||||| ||| |||||||||||||||||||||| |||||||| |||| |||||| || |||| |
|
|
| T |
25457808 |
caagaaagtgagcatcttttggcaagatatattctaaagaatacaaaagttttgcaaaccatgaaaatcgattgtggtgaagacttcaaaatattaagag |
25457709 |
T |
|
| Q |
193 |
agttattattatgcccaagggc |
214 |
Q |
| |
|
||||| | ||||||| |||||| |
|
|
| T |
25457708 |
agttactcttatgccaaagggc |
25457687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 986036 - 985984
Alignment:
| Q |
109 |
tattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatc |
161 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
986036 |
tattagcaagacatattctaaagaatgcaagaattttacaaaccatgaaaatc |
985984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 996783 - 996744
Alignment:
| Q |
121 |
atattctaaagaatgcaagagttttgcaaaccatgaaaat |
160 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
996783 |
atattctaaagaatgcaagacttttacaaaccatgaaaat |
996744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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