View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19071_low_11 (Length: 261)
Name: NF19071_low_11
Description: NF19071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19071_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 34686969 - 34686744
Alignment:
| Q |
1 |
tatgattctcaaccgggaaagagggaaatgggggtgtaggtagttgtagaccggtttcagcgagggtgtgaggataagtatcatcttggttttggttcag |
100 |
Q |
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| T |
34686969 |
tatgattctcaaccgggaaagagggaaatgggggtgtaggtagttgtagaccggtttcagcgagggtgtcaggataagtatcatcttggttttggttcag |
34686870 |
T |
|
| Q |
101 |
agagattgcaggtgaattaggcaccatcaccgtcccatcattaatattggagattccaataatattgttagatgaagatgatgaagatgagttgggtggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34686869 |
agagattgcaggtgaattaggcaccatcaccgtcccatcattaatattggagattccaataatattgttagaggaagatgatgaagatgagttgggtggt |
34686770 |
T |
|
| Q |
201 |
ggtttgttgatgtgtgggtgagagtt |
226 |
Q |
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||| || |||| |||||| ||||||| |
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| T |
34686769 |
ggtgtggtgatttgtgggagagagtt |
34686744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 34694895 - 34694672
Alignment:
| Q |
1 |
tatgattctcaaccgggaaagagggaaatgggggtgtaggtagttgtagaccggtttcagcgagggtgtgaggataagtatcatcttggttttggttcag |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
34694895 |
tatgattctcaaccgggaaagaggaaaatgggggtgtaggtagttgtagaccggttccagtgagggtgtgaggataagtatcatcttgattttggttcag |
34694796 |
T |
|
| Q |
101 |
agagattgcaggtgaattaggcaccatcaccgtcccatcattaatattggagattccaataatattgttagatgaagatgatgaagatgagttgggtggt |
200 |
Q |
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| T |
34694795 |
agatattgcgggtgaattaggcaccatcaccatcccatcattaatattggagattccaataatattgttagaggaagatgatgaagatgagttgggtggt |
34694696 |
T |
|
| Q |
201 |
ggtttgttgatgtgtgggtgagag |
224 |
Q |
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||| ||||||| |||||| ||||| |
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| T |
34694695 |
ggtgtgttgatttgtgggagagag |
34694672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 8284845 - 8284693
Alignment:
| Q |
1 |
tatgattctcaaccgggaaagagggaaatgggggtgtaggtagttgtagaccggtttcagcgagggtgtgaggataagtatcatcttggttttggttcag |
100 |
Q |
| |
|
||||||||| || ||||||||| ||||||||||||||||||||||| | ||||| ||| |||| ||| ||||| |||| ||||||||||||||| |
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| T |
8284845 |
tatgattctgcacagggaaagagaaaaatgggggtgtaggtagttgtaaatcggttccagtaggggtttgaaaataagcatcaacttggttttggttcac |
8284746 |
T |
|
| Q |
101 |
agagattgcaggtgaattaggcaccatcaccgtcccatcattaatattggaga |
153 |
Q |
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|||| ||| |||||||||| | || |||| ||||||||||| |||||||| |
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| T |
8284745 |
cgagactgcgggtgaattagaaaacaccaccatcccatcattagcattggaga |
8284693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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