View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19071_low_13 (Length: 243)
Name: NF19071_low_13
Description: NF19071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19071_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 39005246 - 39005468
Alignment:
| Q |
1 |
tttagatatattctcatagctggctctgctgagtagtgaaaaggccaacaaaaacacatctgctcctctatagctcaatggcctaagcctgttataatcc |
100 |
Q |
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| T |
39005246 |
tttagatatattctcatagctggctctgctgagtagtgaaaaggccaacaaaaacacatctgctcctctatagctcaatggcctaagcctgttataatcc |
39005345 |
T |
|
| Q |
101 |
tcttgtcctgaatttttatgaagccataaaaatttagtaaatattgtaaattgtaagacgtagattcattaccgcctaaagaaaatgcttaccagcagtg |
200 |
Q |
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| T |
39005346 |
tcttgtcctgaatttttatgaagccacaaaaatttaataaatattgtaaattgtaagacgtagattcgttaccgcctaaagaaaatggttaccagcagtg |
39005445 |
T |
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| Q |
201 |
tcccataatccaagattaactgt |
223 |
Q |
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| T |
39005446 |
tcccataatccaagattaactgt |
39005468 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 35253833 - 35253760
Alignment:
| Q |
38 |
gaaaaggccaacaaaaacacatctgctcctctatagctcaatggcctaagcctgttataatcctcttgtcctga |
111 |
Q |
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| T |
35253833 |
gaaaaagccaagacaaagacatctgcccctctgtagctcaaaggcctcagcctattgtaatcctcttgccctga |
35253760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 34676741 - 34676677
Alignment:
| Q |
46 |
caacaaaaacacatctgctcctctatagctcaatggcctaagcctgttataatcctcttgtcctg |
110 |
Q |
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| T |
34676741 |
caacaaaaacacatcagctcctctgtaactcaatggccttaatctattgtaatcttcttgtcctg |
34676677 |
T |
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