View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19071_low_2 (Length: 444)
Name: NF19071_low_2
Description: NF19071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19071_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 21180902 - 21181324
Alignment:
| Q |
19 |
tccctatcaagtagaccttaagaaattttggcaaactcgtcgagtgtttcctgaatgcttgaaatatagtttgaaggtggtagaagtaattggattgaga |
118 |
Q |
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| T |
21180902 |
tccctatcaagtagaccttaagaaattttggcaaactcgtcgagtgtttcctgaatgcttgaaaaatagtttgaaggtggtagaagtaattggattgaga |
21181001 |
T |
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| Q |
119 |
ggcacaaacgaagaacttatgacttgttgctttcttatgcaaggaaaagttttggaacagattaatattaagttgtggaatgaagatgatggtaaagaag |
218 |
Q |
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| T |
21181002 |
gccacaaacgaagaacttatgacttgttgctttcttatgcaaggaaaagttttggaacagattaatattaagttgtggaatgaagatgatggtaaagaag |
21181101 |
T |
|
| Q |
219 |
attttcgacgtggatctgcacaacttttaatcaaagctcaaaagggttcaaagaatttgcaaatatcaattgattgagtaatgtgatcttgtaatattag |
318 |
Q |
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| T |
21181102 |
aatttcgacgtggatctgcacaacttttagtcaaagctcaaaagggttcaaagaatttgcaaatatcaattgattgagtaatgtgatcttgtaatattag |
21181201 |
T |
|
| Q |
319 |
attattcggtaaagtcttgttccatgattctatctttcgtacttaac-----tgtgttcaataaagtatttttccgt-atcc--ctcattccaaaatatg |
410 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||| |||||||||||||||| |
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| T |
21181202 |
attattcgataaagtcttgttccatgattctatctttcgtacttaactaaggtgtgttcaataaagtattgttccgtaatccctctcattccaaaatatg |
21181301 |
T |
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| Q |
411 |
acattgtttgatcatatgatatt |
433 |
Q |
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| T |
21181302 |
acattgtttgatcatatgatatt |
21181324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 43 - 295
Target Start/End: Complemental strand, 40993987 - 40993738
Alignment:
| Q |
43 |
attttggcaaactcgtcgagtgtttcctgaatgcttgaaatatagtttgaaggtggtagaagtaattggattgagaggcacaaacgaagaacttatgact |
142 |
Q |
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|||||||||||| ||||||||||||||| |||||||| || ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40993987 |
attttggcaaacgcgtcgagtgtttcctcaatgcttgcaaaatactttgaaggtggtagaagtaattggattgagagccacaaacgaagaacttatgact |
40993888 |
T |
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| Q |
143 |
tgttgctttcttatgcaaggaaaagttttggaacagattaatattaagttgtggaatgaagatgatggtaaagaagattttcgacgtggatctgcacaac |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | || | ||| | |||| |||||||| |
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| T |
40993887 |
tgttgctttcttatgcaaggaaaagttttggaacagattaatattaagttgtggaatgaa---gatggaaaggtggaatatcgccatggacgtgcacaac |
40993791 |
T |
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| Q |
243 |
ttttaatcaaagctcaaaagggttcaaagaatttgcaaatatcaattgattga |
295 |
Q |
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| T |
40993790 |
ttttagtcaatgctccaaagcgttcaaagaatttgcgaatatcaattgattga |
40993738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 40989619 - 40989433
Alignment:
| Q |
23 |
tatcaagtagaccttaagaaattttggcaaactcgtcgagtgtttcctgaatgcttgaaatatagtttgaaggtggtagaagtaattggattgagaggca |
122 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||| || |||||||| || ||| ||||||||||||||||||||| |||||||||| || |
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| T |
40989619 |
tatcatgttgaccttaagaaattttggcaaactcgtcgagtgttttctcaatgcttgcaaaatactttgaaggtggtagaagtaataggattgagagcca |
40989520 |
T |
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| Q |
123 |
caaacgaagaacttatgacttgttgctttcttatgcaaggaaaagttttggaacagatta------atattaagttgtggaatgaag |
203 |
Q |
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| T |
40989519 |
cagacgaataacttataacttgttgctttcttatgcaaggaatttttttggaacatattattaattatattaagttgtggaatgaag |
40989433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 40986239 - 40986064
Alignment:
| Q |
31 |
agaccttaagaaattttggcaaactcgtcgagtgtttcctgaatgcttgaaatatagtttgaaggtggtagaagtaattggattgagaggcacaaacgaa |
130 |
Q |
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||||||| |||||||||||||||| |||||||||||| || |||||||| || ||| ||||||| || ||||| || |||||| ||||| ||||||| || |
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| T |
40986239 |
agaccttgagaaattttggcaaacgcgtcgagtgtttgctcaatgcttgcaaaatactttgaagatgatagaaatatttggatcgagagccacaaaccaa |
40986140 |
T |
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| Q |
131 |
gaacttatgacttgttgctttcttatgcaaggaaaagttttggaacagattaatattaagttgtggaatgaagatg |
206 |
Q |
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| T |
40986139 |
gaacttaggacttgttgctttctaatgaaagggaaagctttggaacagattaatattaagttgtcgaatgaagatg |
40986064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 40993665 - 40993603
Alignment:
| Q |
304 |
atcttgtaatattagattattcggtaaagtcttgttccatgattctatctttcgtacttaact |
366 |
Q |
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| T |
40993665 |
atcttttaatattagattattcaataaagtcttgttccatgattctatctttcgtacttaact |
40993603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 40985946 - 40985902
Alignment:
| Q |
292 |
ttgagtaatgtgatcttgtaatattagattattcggtaaagtctt |
336 |
Q |
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| T |
40985946 |
ttgagtaatgtgatcttgtaatactagattattcaataaagtctt |
40985902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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