View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19071_low_4 (Length: 438)
Name: NF19071_low_4
Description: NF19071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19071_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 24 - 419
Target Start/End: Original strand, 3357983 - 3358398
Alignment:
| Q |
24 |
agagcgttagatttgtaggcatgagagcaagcaagcaacggtaatgacaattttgaatatatt---acatattacannnnnnnn--atgggaaggtgata |
118 |
Q |
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| T |
3357983 |
agagcgttagatttgtaggcatgagagcaagcaagcaacggtaatgacaattttgaatatattgttacatattacattttttttttatgggaaggtgata |
3358082 |
T |
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| Q |
119 |
actttgaaacaatattttacgtgtttaataatccttcttattgtcatagttagaatggtaaacaaattccatagtctatcattagaagttaccctttttg |
218 |
Q |
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| T |
3358083 |
actttgtaacaatattttaggtgtttaataatccttcttattgtcatagttagaatggtaaacaaattctatagtctatcattagaagttaccctttttg |
3358182 |
T |
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| Q |
219 |
ttactgtaaaaatgttgatttatctgccattgttgctaggtggtttattttttgactttgttttgaatctaattatattgaaacttacatagctattatg |
318 |
Q |
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| T |
3358183 |
ttactgtaaaaatgttgatttatctgccattgttgctaggt-gtttatttttttactttgttttgaatctaattatattgaaacttacatagctattatg |
3358281 |
T |
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| Q |
319 |
actaaatgaaaattaggattagagtat-aagaactatggcaacttgggatttgg---------------ttggatttagtatgggaaagagaattgtgtt |
402 |
Q |
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| T |
3358282 |
actaaaagaaaattaggattagagtataaagaactatggcaacttgggatttggttggattgagctacattggatttagtatgggaaagagaattgtgtt |
3358381 |
T |
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| Q |
403 |
cgggctttggagtggag |
419 |
Q |
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| T |
3358382 |
cgggctttggagtggag |
3358398 |
T |
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