View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19071_low_6 (Length: 431)
Name: NF19071_low_6
Description: NF19071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19071_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 3759240 - 3759383
Alignment:
| Q |
14 |
cctgtgtatggaactactcgtgttagttaattagttaattattgattagtactaatagtgtcattgttaatgcatgaggctagaagcatatatcatatat |
113 |
Q |
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| T |
3759240 |
cctgtgtatggaactacccgtgttagttaattagttaattattgattagtaataatagtgtcattgttaatgcatgaggctagaagcatatatcatatat |
3759339 |
T |
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| Q |
114 |
agatacatgaataacagaaccatttggatatttgtttttctaag |
157 |
Q |
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| T |
3759340 |
agatacatgaataacagaaccatttggatatttgtctttctaag |
3759383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 168 - 359
Target Start/End: Original strand, 3759486 - 3759665
Alignment:
| Q |
168 |
ttgtaagtgtgatgtgaacaaaaagaacaaaaatagagtaatgcttaacctcaagaattgttgtatcgcgagatgttcacgagagacaagc---gtcatt |
264 |
Q |
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| T |
3759486 |
ttgtaagtgcgatgtgaacaaaaagaacaaaaatagagtaatgc---------------gttgtattgcgagatgttcaggagagataagacgtgtcatt |
3759570 |
T |
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| Q |
265 |
tattttgaccacaacaaatcctttattccaccaaatctcgaattgacaccctttcaaacattcaacatgtccgtattcgtgagtttttgggacgt |
359 |
Q |
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| T |
3759571 |
tattttgaccccaacaaataatttattccaccaaatctggaattgacactctttctaacattaaacatatctgttttcgtgagtttttgggacgt |
3759665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 409
Target Start/End: Original strand, 3759880 - 3759927
Alignment:
| Q |
359 |
tataggagggctctataataacaagtgtagtttgaaacaatcaatctcaca |
409 |
Q |
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| T |
3759880 |
tatagtagggctctataataa---gtgtagtttgaaacaatcaatctcaca |
3759927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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