View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19072_high_2 (Length: 369)

Name: NF19072_high_2
Description: NF19072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19072_high_2
NF19072_high_2
[»] chr6 (7 HSPs)
chr6 (17-359)||(11315812-11316154)
chr6 (195-271)||(11208308-11208384)
chr6 (196-260)||(11155208-11155272)
chr6 (196-260)||(11195655-11195719)
chr6 (197-271)||(11274872-11274946)
chr6 (203-271)||(11242178-11242246)
chr6 (195-260)||(11169486-11169551)
[»] chr5 (1 HSPs)
chr5 (32-75)||(20151514-20151557)
[»] chr3 (1 HSPs)
chr3 (32-75)||(54713664-54713707)
[»] chr7 (1 HSPs)
chr7 (32-74)||(38754897-38754939)


Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 359
Target Start/End: Complemental strand, 11316154 - 11315812
Alignment:
Q  17 caataagcaagtcggataatgtatgtatagaagaaagggtgtacatgaaatattatcctatttaattagacacaaatatggaagatattaagccagtgat 116  Q
    |||||||||||||||| ||||| |||||||||||||| || ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  11316154 caataagcaagtcggacaatgtgtgtatagaagaaagtgtctacatgaaacactatcctatttaattagacacaaatatggaagatattaagccagtgat 11316055  T
Q  117 gtcatttgttgcagctatatacactacctggaaagtatattttagtaataacggtaaccaatgattctttttcttgttttcttgcacaccatgctcctca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11316054 gtcatttgttgcagctatatacactacctggaaagtatattttagtaataacggtaaccaatgattctttttcttgttttcttgcacaccatgctcctca 11315955  T
Q  217 tcctttatcttcttcacaataattccatcaaacacacttgaaagcattctcctatgttcctcaatttcatgttgttttgcatcctcatgattaacacgaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11315954 tcctttatcttcttcacaataattccatcaaacacacttgaaagcattctcctatgttcctcaatttcatgttgttttgcatcctcatgattaacacgaa 11315855  T
Q  317 gccagagtaaagtcaaaccaattgcatcattgatctttttctt 359  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11315854 gccagagtaaagtcaaaccaattgcatcattgatctttttctt 11315812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 11208308 - 11208384
Alignment:
Q  195 ttcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaagcattctcctat 271  Q
    ||||| |||||||||| |||||||||||||| |||||| |||||||  |||||||||||||||||| || |||||||    
T  11208308 ttcttccacaccatgcccctcatcctttatcatcttcaaaataattggatcaaacacacttgaaagaatgctcctat 11208384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 11155208 - 11155272
Alignment:
Q  196 tcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaag 260  Q
    |||||||||||||||  |||||| |||||||||||||| |||| | ||||||| |||||||||||    
T  11155208 tcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacacttgaaag 11155272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 11195655 - 11195719
Alignment:
Q  196 tcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaag 260  Q
    |||||||||||||||  |||||| |||||||||||||| |||| | ||||||| |||||||||||    
T  11195655 tcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacacttgaaag 11195719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 11274872 - 11274946
Alignment:
Q  197 cttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaagcattctcctat 271  Q
    |||||||||||||  |||||||||||||| |||| | || ||||  |||||||||||||||||| || |||||||    
T  11274872 cttgcacaccatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctcctat 11274946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 11242246 - 11242178
Alignment:
Q  203 caccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaagcattctcctat 271  Q
    |||||||| ||||||| || ||| || |||||||||||  |||||||||||||||||| || |||||||    
T  11242246 caccatgcccctcatctttgatcatcatcacaataattttatcaaacacacttgaaagaatgctcctat 11242178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 11169486 - 11169551
Alignment:
Q  195 ttcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaag 260  Q
    ||||||||||| |||  |||||||||||||| |||| | || ||||  ||||||||||||||||||    
T  11169486 ttcttgcacacaatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaag 11169551  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 20151514 - 20151557
Alignment:
Q  32 ataatgtatgtatagaagaaagggtgtacatgaaatattatcct 75  Q
    ||||||||||||| ||| ||| ||||||||||||||||||||||    
T  20151514 ataatgtatgtatggaaaaaaaggtgtacatgaaatattatcct 20151557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 54713664 - 54713707
Alignment:
Q  32 ataatgtatgtatagaagaaagggtgtacatgaaatattatcct 75  Q
    ||||||||||| | ||| ||||||||||||||||||||||||||    
T  54713664 ataatgtatgtgtggaaaaaagggtgtacatgaaatattatcct 54713707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 38754939 - 38754897
Alignment:
Q  32 ataatgtatgtatagaagaaagggtgtacatgaaatattatcc 74  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||    
T  38754939 ataatgtatgtatggaaaaaaaggtgtacatgaaatattatcc 38754897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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