View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19072_high_3 (Length: 317)

Name: NF19072_high_3
Description: NF19072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19072_high_3
NF19072_high_3
[»] chr5 (5 HSPs)
chr5 (192-291)||(11571323-11571422)
chr5 (196-279)||(30574993-30575076)
chr5 (192-273)||(2358626-2358708)
chr5 (208-279)||(2359234-2359306)
chr5 (208-279)||(36258328-36258400)
[»] chr2 (7 HSPs)
chr2 (192-307)||(3322715-3322830)
chr2 (192-279)||(37912186-37912273)
chr2 (206-279)||(6208425-6208498)
chr2 (192-269)||(2046822-2046900)
chr2 (206-279)||(6204357-6204430)
chr2 (225-307)||(6207305-6207385)
chr2 (117-173)||(3666892-3666948)
[»] chr4 (5 HSPs)
chr4 (192-278)||(39820518-39820604)
chr4 (87-163)||(9458666-9458742)
chr4 (192-273)||(39819469-39819550)
chr4 (244-291)||(42559928-42559975)
chr4 (192-263)||(16434078-16434149)
[»] chr8 (5 HSPs)
chr8 (192-307)||(12300092-12300209)
chr8 (192-278)||(12296206-12296292)
chr8 (206-278)||(21348251-21348324)
chr8 (4-48)||(10854021-10854065)
chr8 (209-259)||(29091841-29091891)
[»] chr1 (9 HSPs)
chr1 (192-277)||(27789283-27789368)
chr1 (206-279)||(44289845-44289919)
chr1 (206-278)||(44289419-44289492)
chr1 (1-46)||(1477951-1477996)
chr1 (1-45)||(1478566-1478610)
chr1 (1-46)||(35597549-35597594)
chr1 (117-173)||(1477988-1478044)
chr1 (1-45)||(23740507-23740551)
chr1 (1-45)||(35596934-35596978)
[»] chr3 (5 HSPs)
chr3 (192-279)||(7725800-7725888)
chr3 (192-273)||(7726399-7726481)
chr3 (192-278)||(35651521-35651610)
chr3 (206-276)||(35652120-35652192)
chr3 (209-259)||(2779772-2779822)
[»] chr7 (7 HSPs)
chr7 (192-279)||(33670881-33670968)
chr7 (1-50)||(47171417-47171466)
chr7 (89-131)||(10233223-10233265)
chr7 (116-172)||(31552027-31552083)
chr7 (209-259)||(1468976-1469026)
chr7 (192-242)||(18097401-18097451)
chr7 (117-173)||(47171369-47171425)
[»] chr6 (2 HSPs)
chr6 (192-278)||(30322447-30322533)
chr6 (206-263)||(30322922-30322979)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 192 - 291
Target Start/End: Original strand, 11571323 - 11571422
Alignment:
Q  192 ttaaaagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctctccctcttttccatcattcactcgcgcttcttc 291  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||||    
T  11571323 ttaaaagcaatgaatgagattaaaacatcacttaagtgactcatgtgccaggcatatgaccattctctccctcttttccatcattcacgcgcgcttcttc 11571422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 30574993 - 30575076
Alignment:
Q  196 aagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctctccctcttttccatcattcac 279  Q
    |||||||| || |||||||||||||| |||||||||||||||| ||  |||| ||||||||||| |||||||||||||||||||    
T  30574993 aagcaatggattagattaaaacatcacttaagtgactcatgtgccaagcatgcgaccattctcttcctcttttccatcattcac 30575076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 2358626 - 2358708
Alignment:
Q  192 ttaaaagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcagacatgtgacc-attctctccctcttttccatc 273  Q
    |||||||||||| |||||||||||||| || |||||||||||||||  || |||||||||| |||||||||||||||||||||    
T  2358626 ttaaaagcaatggatgagattaaaacaacacttaagtgactcatgtaccaaacatgtgaccaattctctccctcttttccatc 2358708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 2359306 - 2359234
Alignment:
Q  208 agattaaaacatcatttaagtgactcatgtgtcagacatgtgacc-attctctccctcttttccatcattcac 279  Q
    |||||||||||||| |||||| ||||||||||||  ||||||||| ||||||||||||||||||||| |||||    
T  2359306 agattaaaacatcacttaagtaactcatgtgtcaagcatgtgaccaattctctccctcttttccatcgttcac 2359234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 36258328 - 36258400
Alignment:
Q  208 agattaaaacatcatttaagtgactcatgtgtcagacatgtgacc-attctctccctcttttccatcattcac 279  Q
    ||||||||| |||| |||||||||||||||| || |||||||||| |||||||||| |||||||||| |||||    
T  36258328 agattaaaatatcacttaagtgactcatgtgccaaacatgtgaccaattctctcccccttttccatcgttcac 36258400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 192 - 307
Target Start/End: Complemental strand, 3322830 - 3322715
Alignment:
Q  192 ttaaaagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctctccctcttttccatcattcactcgcgcttcttc 291  Q
    |||||| |||||||||||||||||||| || |||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||  ||||||||||    
T  3322830 ttaaaaacaatgaatgagattaaaacaccacttaagtgactcatgtgccaggcatgtgactattctctccctcttttccatcattcacgtgcgcttcttc 3322731  T
Q  292 ctcgtagtgcttggac 307  Q
    ||| | ||||||||||    
T  3322730 ctcatggtgcttggac 3322715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 37912273 - 37912186
Alignment:
Q  192 ttaaaagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctctccctcttttccatcattcac 279  Q
    |||||||||||| || |||||||||||||| |||| ||||||||||| ||  |||||||||||||||| ||||||||||||| |||||    
T  37912273 ttaaaagcaatggattagattaaaacatcacttaaatgactcatgtgccaagcatgtgaccattctcttcctcttttccatccttcac 37912186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 6208425 - 6208498
Alignment:
Q  206 tgagattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctctccctcttttccatcattcac 279  Q
    ||||||||||||| || |||||||||||||||| ||  |||||||||||||||||||| |||||||||||||||    
T  6208425 tgagattaaaacaccacttaagtgactcatgtgccaagcatgtgaccattctctcccttttttccatcattcac 6208498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 2046900 - 2046822
Alignment:
Q  192 ttaaaagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcagacatgtgacc-attctctccctcttttc 269  Q
    ||||||||||||  ||||||||||||| || |||||||||||||||| || |||||||||| |||||||||||||||||    
T  2046900 ttaaaagcaatgggtgagattaaaacaacacttaagtgactcatgtgccaaacatgtgaccaattctctccctcttttc 2046822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 6204357 - 6204430
Alignment:
Q  206 tgagattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctctccctcttttccatcattcac 279  Q
    ||||||||||||| || |||| ||||||||||| ||  |||||||||||||||||||| |||||||||||||||    
T  6204357 tgagattaaaacaccacttaaatgactcatgtgccaagcatgtgaccattctctcccttttttccatcattcac 6204430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 307
Target Start/End: Complemental strand, 6207385 - 6207305
Alignment:
Q  225 aagtgactcatgtgtcagacatgtgaccattctctccctcttttccatcattcactcgcgcttcttcctcgtagtgcttggac 307  Q
    |||||| ||||||| ||  |||||||||||| | ||||||||||||||||||||  |||||||||||||| || | |||||||    
T  6207385 aagtgattcatgtgccaagcatgtgaccattttatccctcttttccatcattca--cgcgcttcttcctcttatttcttggac 6207305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 3666948 - 3666892
Alignment:
Q  117 gatataatttaaaccgcacaatcaactaaattaaacggttgagatttgatgtaagtc 173  Q
    |||||||||||||||  || ||||| |||||| ||||||| ||||||| ||||||||    
T  3666948 gatataatttaaaccatacgatcaattaaatttaacggttaagatttggtgtaagtc 3666892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 39820604 - 39820518
Alignment:
Q  192 ttaaaagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctctccctcttttccatcattca 278  Q
    |||||| |||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39820604 ttaaaaacaatgaatgagattaaaacaccacttaagtgactcatgtgccagacatgtgaccattctctccctcttttccatcattca 39820518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 9458742 - 9458666
Alignment:
Q  87 gtgcaacgtgttctttttatttattgtggtgatataatttaaaccgcacaatcaactaaattaaacggttgagattt 163  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  9458742 gtgcaatgtgttctttttatttcttgtggtgatataatttaaaccgcacgatcaactaaattaaacggttgaaattt 9458666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 39819469 - 39819550
Alignment:
Q  192 ttaaaagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctctccctcttttccatc 273  Q
    |||||||||||||||||||||||||||  | |||||||||||||||  ||| ||||||||||||||||||||||||||||||    
T  39819469 ttaaaagcaatgaatgagattaaaacactacttaagtgactcatgtaccaggcatgtgaccattctctccctcttttccatc 39819550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 42559928 - 42559975
Alignment:
Q  244 catgtgaccattctctccctcttttccatcattcactcgcgcttcttc 291  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||    
T  42559928 catgtgaccattctctccctcttttccatcattcgcgcgcgcttcttc 42559975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 16434078 - 16434149
Alignment:
Q  192 ttaaaagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctctccct 263  Q
    ||||||| ||| | ||||||||||||| || ||||||||||||| ||| |  ||||||||||||| ||||||    
T  16434078 ttaaaagtaataagtgagattaaaacaccacttaagtgactcatatgttaagcatgtgaccattccctccct 16434149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 192 - 307
Target Start/End: Complemental strand, 12300209 - 12300092
Alignment:
Q  192 ttaaaagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctctccctcttttccatcattca--ctcgcgcttct 289  Q
    ||||||||||||||||||||||||||| || |||| | ||||||||| ||| |||||||||||||||||||||||||||||||||||  | |||||||||    
T  12300209 ttaaaagcaatgaatgagattaaaacaccacttaaattactcatgtgccaggcatgtgaccattctctccctcttttccatcattcacgcgcgcgcttct 12300110  T
Q  290 tcctcgtagtgcttggac 307  Q
    |||||  | |||||||||    
T  12300109 tcctcacattgcttggac 12300092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 12296206 - 12296292
Alignment:
Q  192 ttaaaagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctctccctcttttccatcattca 278  Q
    ||||||||||||||||||||||||||| || |||||||||||||||| ||  ||||||||||||||||| |||||||||||||||||    
T  12296206 ttaaaagcaatgaatgagattaaaacaccacttaagtgactcatgtgccaagcatgtgaccattctctctctcttttccatcattca 12296292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 21348324 - 21348251
Alignment:
Q  206 tgagattaaaacatcatttaagtgactcatgtgtcagacatgtgacca-ttctctccctcttttccatcattca 278  Q
    |||||||||| |||||  | | ||||||||||| ||  |||||||||| |||||||||||||||||||||||||    
T  21348324 tgagattaaagcatcacctgaatgactcatgtgccaagcatgtgaccagttctctccctcttttccatcattca 21348251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 10854065 - 10854021
Alignment:
Q  4 taagttttttgacttacaccaggtgtcaatggatcctgactcata 48  Q
    ||||| |||||||||||||| |||||||| |||||||||||||||    
T  10854065 taagtcttttgacttacacctggtgtcaacggatcctgactcata 10854021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 29091891 - 29091841
Alignment:
Q  209 gattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctct 259  Q
    |||||||||| || |||| ||||||||||| || |||||||||||||||||    
T  29091891 gattaaaacaccacttaaatgactcatgtgccaaacatgtgaccattctct 29091841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 192 - 277
Target Start/End: Complemental strand, 27789368 - 27789283
Alignment:
Q  192 ttaaaagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctctccctcttttccatcattc 277  Q
    |||||| ||||| || |||||||||||||| |||||||||||||||| || ||||||||| ||||||| |||||||||||||||||    
T  27789368 ttaaaaacaatggattagattaaaacatcacttaagtgactcatgtgccaaacatgtgactattctcttcctcttttccatcattc 27789283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 44289919 - 44289845
Alignment:
Q  206 tgagattaaaacatcatttaagtgactcatgtgtcagacatgtgacc-attctctccctcttttccatcattcac 279  Q
    |||||||||||||||| |||||||||||||||| ||   |||||||| ||||||||||||||||||||| |||||    
T  44289919 tgagattaaaacatcacttaagtgactcatgtgccaaggatgtgaccaattctctccctcttttccatcgttcac 44289845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 44289419 - 44289492
Alignment:
Q  206 tgagattaaaacatcatttaagtgactcatgtgtcagacatgtgacc-attctctccctcttttccatcattca 278  Q
    |||||||||||||||| |||||||||||||||| ||  ||||||||| |||||||||||||||| |||| ||||    
T  44289419 tgagattaaaacatcacttaagtgactcatgtgccaagcatgtgaccaattctctccctctttttcatcgttca 44289492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1477996 - 1477951
Alignment:
Q  1 gtgtaagttttttgacttacaccaggtgtcaatggatcctgactca 46  Q
    |||||||| |||||||||||||| |||||||| |||||||||||||    
T  1477996 gtgtaagtcttttgacttacacctggtgtcaacggatcctgactca 1477951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1478566 - 1478610
Alignment:
Q  1 gtgtaagttttttgacttacaccaggtgtcaatggatcctgactc 45  Q
    |||||||| |||||||||||||| |||||||| ||||||||||||    
T  1478566 gtgtaagtcttttgacttacacctggtgtcaacggatcctgactc 1478610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35597549 - 35597594
Alignment:
Q  1 gtgtaagttttttgacttacaccaggtgtcaatggatcctgactca 46  Q
    |||||| | |||||||||||||| |||||||| |||||||||||||    
T  35597549 gtgtaaatcttttgacttacacctggtgtcaacggatcctgactca 35597594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 1478044 - 1477988
Alignment:
Q  117 gatataatttaaaccgcacaatcaactaaattaaacggttgagatttgatgtaagtc 173  Q
    |||||||||||||||  || ||||| |||||| ||||||| ||||||| ||||||||    
T  1478044 gatataatttaaaccatacgatcaattaaatttaacggttaagatttggtgtaagtc 1477988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23740551 - 23740507
Alignment:
Q  1 gtgtaagttttttgacttacaccaggtgtcaatggatcctgactc 45  Q
    |||||||| |||||||||| ||| |||||||| ||||||||||||    
T  23740551 gtgtaagtcttttgacttaaacctggtgtcaacggatcctgactc 23740507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35596978 - 35596934
Alignment:
Q  1 gtgtaagttttttgacttacaccaggtgtcaatggatcctgactc 45  Q
    |||||||| |||||||||||| | |||||||| ||||||||||||    
T  35596978 gtgtaagtcttttgacttacatccggtgtcaacggatcctgactc 35596934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 7725800 - 7725888
Alignment:
Q  192 ttaaaagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcagacatgtgacc-attctctccctcttttccatcattcac 279  Q
    ||||||||||||  | |||||||||||||| |||||| ||||||||||||  ||||||||| ||||||||||||||||||||| |||||    
T  7725800 ttaaaagcaatgggtcagattaaaacatcacttaagtaactcatgtgtcaagcatgtgaccaattctctccctcttttccatcgttcac 7725888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 7726481 - 7726399
Alignment:
Q  192 ttaaaagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcagacatgtga-ccattctctccctcttttccatc 273  Q
    ||||||||||||  ||||||||||||| || |||||||||||||||| || |||||||| | |||||||||||||||||||||    
T  7726481 ttaaaagcaatgggtgagattaaaacaacacttaagtgactcatgtgccaaacatgtgatcaattctctccctcttttccatc 7726399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 35651521 - 35651610
Alignment:
Q  192 ttaaaagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcagaca----tgtgaccattctctccctcttttccatcattca 278  Q
    |||||||||||| |||||||||||||| || |||| ||||||||||| ||  ||    ||||||| |||||||||||||||||||||||||    
T  35651521 ttaaaagcaatggatgagattaaaacaccacttaaatgactcatgtgccaagcatgcgtgtgacc-ttctctccctcttttccatcattca 35651610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 35652192 - 35652120
Alignment:
Q  206 tgagattaaaacatcatttaagtgactcatgtgtcagacatgtgaccat--tctctccctcttttccatcatt 276  Q
    ||||||||||||| || ||||||||||| |||| || |||||||| |||  ||||||||||| ||||||||||    
T  35652192 tgagattaaaacaccacttaagtgactcgtgtgccaaacatgtgatcattctctctccctctcttccatcatt 35652120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 2779772 - 2779822
Alignment:
Q  209 gattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctct 259  Q
    |||||||||| || |||| ||||||||||| || |||||||||||||||||    
T  2779772 gattaaaacaccacttaaatgactcatgtgccaaacatgtgaccattctct 2779822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 33670968 - 33670881
Alignment:
Q  192 ttaaaagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctctccctcttttccatcattcac 279  Q
    |||||||||||| || |||||||||||||| |||| ||||||||||| ||  ||||||| |||||||| | |||||||||||||||||    
T  33670968 ttaaaagcaatggattagattaaaacatcacttaaatgactcatgtgccaagcatgtgatcattctcttcttcttttccatcattcac 33670881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 47171417 - 47171466
Alignment:
Q  1 gtgtaagttttttgacttacaccaggtgtcaatggatcctgactcatata 50  Q
    |||||||| |||||||||||||| |||||||| |||||||||||||||||    
T  47171417 gtgtaagtcttttgacttacacctggtgtcaacggatcctgactcatata 47171466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 10233265 - 10233223
Alignment:
Q  89 gcaacgtgttctttttatttattgtggtgatataatttaaacc 131  Q
    |||| ||||||||||||||||| ||||||||||||||||||||    
T  10233265 gcaatgtgttctttttatttatggtggtgatataatttaaacc 10233223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 31552083 - 31552027
Alignment:
Q  116 tgatataatttaaaccgcacaatcaactaaattaaacggttgagatttgatgtaagt 172  Q
    |||||| |||||||||  || ||||| |||||||||| |||||||||||||||||||    
T  31552083 tgatattatttaaaccatacgatcaaataaattaaacagttgagatttgatgtaagt 31552027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 1469026 - 1468976
Alignment:
Q  209 gattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctct 259  Q
    |||||||||| || |||| ||||||||||| || |||||||||||||||||    
T  1469026 gattaaaacaccacttaaatgactcatgtgccaaacatgtgaccattctct 1468976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 18097451 - 18097401
Alignment:
Q  192 ttaaaagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcag 242  Q
    ||||||| ||||| |||||||||||||| | |||||||| |||||||||||    
T  18097451 ttaaaaggaatgattgagattaaaacatgacttaagtgagtcatgtgtcag 18097401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 47171369 - 47171425
Alignment:
Q  117 gatataatttaaaccgcacaatcaactaaattaaacggttgagatttgatgtaagtc 173  Q
    |||||||||||||||  || ||||| |||||| ||||||| ||||||| ||||||||    
T  47171369 gatataatttaaaccatacgatcaattaaatttaacggttaagatttggtgtaagtc 47171425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 30322447 - 30322533
Alignment:
Q  192 ttaaaagcaatgaatgagattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctctccctcttttccatcattca 278  Q
    ||||||||||||  ||||||||||||| || |||||| ||||||||| ||  |||||||  ||||||||||||||||||||||||||    
T  30322447 ttaaaagcaatgggtgagattaaaacaccacttaagtaactcatgtgccaagcatgtgaaaattctctccctcttttccatcattca 30322533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 30322979 - 30322922
Alignment:
Q  206 tgagattaaaacatcatttaagtgactcatgtgtcagacatgtgaccattctctccct 263  Q
    ||||||||||||| || |||||||||||||||| ||  |||||||||| |||||||||    
T  30322979 tgagattaaaacaccacttaagtgactcatgtgccaagcatgtgaccactctctccct 30322922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University