View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19072_low_2 (Length: 463)
Name: NF19072_low_2
Description: NF19072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19072_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 14148903 - 14149136
Alignment:
| Q |
16 |
caagttcagggttcaactgtgaggtataaagcttaatagtgttatggtttagtctcattatttcccatcaacatttttacaaagatgagatgatatacat |
115 |
Q |
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| T |
14148903 |
caagttcagggttcaactgtgaggtataatgcttaatagtgttatggtttagtctcgttatttcccatcaacatttttacaaagatgagatgata--cat |
14149000 |
T |
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| Q |
116 |
catatcaaaattcttagatatgctcaaacacaatactagtagtcgataagcttcatcaacacaaaaaggtgttgatgattcctcattctttgacaattga |
215 |
Q |
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| T |
14149001 |
catatcaaaattcttagatatgctcaaacacaatacaagtagtcgataagcttcatcaacacaaaaaggtgttgatgattcctcattctttgacaattga |
14149100 |
T |
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| Q |
216 |
tccttttcttaattttgtcattctaaggggagaagg |
251 |
Q |
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| T |
14149101 |
tccttttcttaattttgtcattctaagggaagaagg |
14149136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 276 - 449
Target Start/End: Original strand, 14149198 - 14149372
Alignment:
| Q |
276 |
ctagttgaagcttcacaatgctcgaataggctaaactttaaattctaacctctaatggggttctggtgtaaaggaaa-gttgttttcttaaataattcat |
374 |
Q |
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| T |
14149198 |
ctagttgaagcttcacaatgctcgaataggctaaactttaaattctaacctctaatggggttctggtgtaaaggaaaagttgttttcttaaataattcat |
14149297 |
T |
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| Q |
375 |
aggattactacgtcttttaattgtgaaatagcttcttattcttactcaaacactgagacattttgcttcttcgtc |
449 |
Q |
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| T |
14149298 |
aggattactacgtcttttaattttgaaatagcttcttattcctactcaaacaccgagacattttgcttcttcgtc |
14149372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 14143440 - 14143545
Alignment:
| Q |
146 |
caatactagtagtcgataagcttcatcaacacaaaaaggtgttgatgattcctcattctttgacaattgatccttttcttaattttgtcattctaagggg |
245 |
Q |
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||||||||| |||||||||| |||| |||||||||||||| || |||||||||||||| ||||| || ||| | |||||||| ||||||||||||||| |
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| T |
14143440 |
caatactagaagtcgataagtttcaacaacacaaaaaggtattaatgattcctcattcattgacgatcaatcatgttcttaatcttgtcattctaaggga |
14143539 |
T |
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| Q |
246 |
agaagg |
251 |
Q |
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|||||| |
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| T |
14143540 |
agaagg |
14143545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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