View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19072_low_3 (Length: 416)

Name: NF19072_low_3
Description: NF19072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19072_low_3
NF19072_low_3
[»] chr8 (19 HSPs)
chr8 (19-259)||(21438906-21439146)
chr8 (19-378)||(4912961-4913314)
chr8 (19-302)||(4900557-4900833)
chr8 (19-152)||(4716045-4716178)
chr8 (26-151)||(4689501-4689626)
chr8 (25-151)||(10447863-10447989)
chr8 (304-407)||(21439142-21439241)
chr8 (26-151)||(4776032-4776157)
chr8 (20-152)||(4923613-4923745)
chr8 (40-151)||(4996924-4997035)
chr8 (25-151)||(4746053-4746179)
chr8 (25-151)||(4737274-4737400)
chr8 (25-151)||(4889506-4889632)
chr8 (25-152)||(4726717-4726844)
chr8 (40-152)||(4681922-4682034)
chr8 (72-147)||(4874797-4874872)
chr8 (26-150)||(4704011-4704135)
chr8 (170-214)||(4745993-4746037)
chr8 (170-214)||(4726658-4726702)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 21438906 - 21439146
Alignment:
Q  19 ctatatccatcaatgctacaatttaggccttcccacatataattcccaggaccacatggatctccttgccaatttctagccaccttataagcatccttga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21438906 ctatatccatcaatgctacaatttaggccttcccacatataattcccaggaccacatggatctccttgccaatttctagccaccttataagcatccttga 21439005  T
Q  119 tgtttgtgatagcatcaactagtatttggtattcgnnnnnnncagttcagtaaggttttaaagccaatttgcagatagtttactttacaccacaaaatga 218  Q
     ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21439006 cgtttgtgatagcatcaactagtatttggtattcgaaaaaaacagttcagtaaggttttaaagccaatttgcagatagtttactttacaccacaaaatga 21439105  T
Q  219 cacnnnnnnnctcatatactacctcctccgtcactaaatat 259  Q
    |||       |||||||||||||||||||||||||||||||    
T  21439106 cacaaaaaaactcatatactacctcctccgtcactaaatat 21439146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 4912961 - 4913314
Alignment:
Q  19 ctatatccatcaatgctacaatttaggccttcccacatataattcccaggaccacatggatctccttgccaatttctagccaccttataagcatccttga 118  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  4912961 ctatagccatcaatactacagtttaggccttcccacatataattcacaggaccacatggatctccttgccaatttctagccaccacataagcatccttga 4913060  T
Q  119 tgtttgtgatagcatcaactagtatttggtattcgnnnnnnncagttcagtaaggttttaaagccaatttgcagatagtttactttacaccacaaaatga 218  Q
    ||||||||||||||| ||||| ||||||||||| |       ||||||| ||| | |||||| |||||||||| ||||||||||||||||||| ||||||    
T  4913061 tgtttgtgatagcattaactattatttggtatttg-aaaaaacagttcaataaagatttaaatccaatttgcacatagtttactttacaccac-aaatga 4913158  T
Q  219 cacnnnnnnnctcatatactacctcctccgtcactaaatatagtatatcgttgacaaaatcacgaaaattaagaaaatttgtagcaatatttaatttatt 318  Q
    |||        || ||||||    |||  |||  |||||||||||||| ||||||||||||  | ||||||||||||||| ||| | |||||| ||||||    
T  4913159 cactaaaaat-tcctatact---gcctatgtctttaaatatagtatattgttgacaaaatcgtggaaattaagaaaatttatagtagtatttactttatt 4913254  T
Q  319 gactattaccgttgtcttataagtttacctataatgagagagaattaatttatacattca 378  Q
    |||||||| | |||||| |||| |||||||||||||||||||||||||||||||||||||    
T  4913255 gactattagcattgtctgataaatttacctataatgagagagaattaatttatacattca 4913314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 4900557 - 4900833
Alignment:
Q  19 ctatatccatcaatgctacaatttaggccttcccacatataattcccaggaccacatggatctccttgccaatttctagccaccttataagcatccttga 118  Q
    ||||| |||||||| ||||| |||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  4900557 ctatagccatcaatactacagtttaggacttcccacatatatttcacaggaccacatggatctccttgccaatttctagccaccccataagcatccttga 4900656  T
Q  119 tgtttgtgatagcatcaactagtatttggtattcgnnnnnnncagttcagtaaggttttaaagccaatttgcagatagtttactttacaccacaaaatga 218  Q
    |||||||||||| ||||||||| |||||||||||        ||||||| | ||| ||||||||||||||||| || |||||||||||||||| ||||||    
T  4900657 tgtttgtgatagtatcaactagcatttggtattc--agaaaacagttcaattaggatttaaagccaatttgcacattgtttactttacaccac-aaatga 4900753  T
Q  219 cacnnnnnnnctcatatactacctcctccgtcactaaatatagtatatcgttgacaaaatcacgaaaattaagaaaatttgtag 302  Q
    |||        ||  ||| ||||||||   ||  || ||||||||||| ||| ||||||||||| |||||||||||||||||||    
T  4900754 cacttaaaat-tctcataatacctcct---tccttacatatagtatattgttcacaaaatcacggaaattaagaaaatttgtag 4900833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 4716178 - 4716045
Alignment:
Q  19 ctatatccatcaatgctacaatttaggccttcccacatataattcccaggaccacatggatctccttgccaatttctagccaccttataagcatccttga 118  Q
    ||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||  ||||| || |||||    
T  4716178 ctatagccatcaatactacaatttaggccttcccacatataattcacaggaccacatggatctccttgccaatttctagtcaccccataagtattcttga 4716079  T
Q  119 tgtttgtgatagcatcaactagtatttggtattc 152  Q
    |||||||||||| |||||||||||||| ||||||    
T  4716078 tgtttgtgatagtatcaactagtattttgtattc 4716045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 4689626 - 4689501
Alignment:
Q  26 catcaatgctacaatttaggccttcccacatataattcccaggaccacatggatctccttgccaatttctagccaccttataagcatccttgatgtttgt 125  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   ||| || | ||| ||||||||    
T  4689626 catcaatactacaatttaggccttcccacatataattcacaggaccacatggatctccttgccaatttctagccactccataggccttcttaatgtttgt 4689527  T
Q  126 gatagcatcaactagtatttggtatt 151  Q
     |||| ||||||||||||||||||||    
T  4689526 aatagtatcaactagtatttggtatt 4689501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 10447989 - 10447863
Alignment:
Q  25 ccatcaatgctacaatttaggccttcccacatataattcccaggaccacatggatctccttgccaatttctagccaccttataagcatccttgatgtttg 124  Q
    |||||||| ||||| |||||||||||||||||||| ||| | ||||||||||||||||| | |||||||||||||| |  |||||||| |||||||||||    
T  10447989 ccatcaatactacagtttaggccttcccacatatacttcactggaccacatggatctccattccaatttctagccatcccataagcattcttgatgtttg 10447890  T
Q  125 tgatagcatcaactagtatttggtatt 151  Q
    |||||| ||||||||||||||||||||    
T  10447889 tgatagtatcaactagtatttggtatt 10447863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 21439142 - 21439241
Alignment:
Q  304 aatatttaatttattgactattaccgttgtcttataagtttacctataatgagagagaattaatttatacattcatcattatatgttttgataaaaagaa 403  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||||||||    
T  21439142 aatatttaatttattgactattaccgttgtcttataaatttacctataat--gagagaattaatttatacattcatcattatatg--ttgataaaaagaa 21439237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 4776032 - 4776157
Alignment:
Q  26 catcaatgctacaatttaggccttcccacatataattcccaggaccacatggatctccttgccaatttctagccaccttataagcatccttgatgtttgt 125  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| |||   |||||||| ||||||||||||    
T  4776032 catcagtgctacagtttaggccttcccacatataattcacaggggcacatggatctccttgccaatttctagtcactccataagcattcttgatgtttgt 4776131  T
Q  126 gatagcatcaactagtatttggtatt 151  Q
    ||||  |||||||||||||| |||||    
T  4776132 gatattatcaactagtattttgtatt 4776157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 4923613 - 4923745
Alignment:
Q  20 tatatccatcaatgctacaatttaggccttcccacatataattcccaggaccacatggatctccttgccaatttctagccaccttataagcatccttgat 119  Q
    |||||||||||| ||| || |||||||||||||| ||||| ||| |||| |||||||||||||||||||||||| ||||||||  |||||  | ||||||    
T  4923613 tatatccatcaacgctgcagtttaggccttcccatatatacttcacagggccacatggatctccttgccaatttttagccaccccataagtcttcttgat 4923712  T
Q  120 gtttgtgatagcatcaactagtatttggtattc 152  Q
    ||||||||||| |||||||||||| | ||||||    
T  4923713 gtttgtgatagtatcaactagtatattgtattc 4923745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 4997035 - 4996924
Alignment:
Q  40 tttaggccttcccacatataattcccaggaccacatggatctccttgccaatttctagccaccttataagcatccttgatgtttgtgatagcatcaacta 139  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||  |||||  | |||||||||| |||||| ||||||||    
T  4997035 tttaggccttcccacatataattcacaggggcacatggatctccttgccaatttctagccaccccataagtgttcttgatgtttatgatagtatcaacta 4996936  T
Q  140 gtatttggtatt 151  Q
    |||||| |||||    
T  4996935 gtatttagtatt 4996924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 4746179 - 4746053
Alignment:
Q  25 ccatcaatgctacaatttaggccttcccacatataattcccaggaccacatggatctccttgccaatttctagccaccttataagcatccttgatgtttg 124  Q
    |||||||| || || ||||||| |||| ||||||| | | ||||||||||||||||||||||||||||||| || |||  |||||||| |||||||||||    
T  4746179 ccatcaatactgcagtttaggcattcctacatatactgcacaggaccacatggatctccttgccaatttctcgcaaccccataagcattcttgatgtttg 4746080  T
Q  125 tgatagcatcaactagtatttggtatt 151  Q
    |||||| |||||||||||||| |||||    
T  4746079 tgatagtatcaactagtatttcgtatt 4746053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 4737400 - 4737274
Alignment:
Q  25 ccatcaatgctacaatttaggccttcccacatataattcccaggaccacatggatctccttgccaatttctagccaccttataagcatccttgatgtttg 124  Q
    |||||| | ||||| ||||||||||||||||| |||||| ||||  ||||||||||||||||||||||||| |||||   |||||||| |||||||||||    
T  4737400 ccatcactactacagtttaggccttcccacatgtaattcacaggggcacatggatctccttgccaatttcttgccacaccataagcattcttgatgtttg 4737301  T
Q  125 tgatagcatcaactagtatttggtatt 151  Q
    | |||| ||||||| |||||| |||||    
T  4737300 tcatagtatcaactggtatttagtatt 4737274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 4889506 - 4889632
Alignment:
Q  25 ccatcaatgctacaatttaggccttcccacatataattcccaggaccacatggatctccttgccaatttctagccaccttataagcatccttgatgtttg 124  Q
    |||||||| || || ||||||||||||||||  |||||| ||||  ||||||||||||||| ||||||||||| || |  |||||||| |||||||||||    
T  4889506 ccatcaatactgcagtttaggccttcccacacgtaattcacaggggcacatggatctccttcccaatttctagtcagcccataagcattcttgatgtttg 4889605  T
Q  125 tgatagcatcaactagtatttggtatt 151  Q
    |||||| |||||||||||||| |||||    
T  4889606 tgatagtatcaactagtatttcgtatt 4889632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 152
Target Start/End: Complemental strand, 4726844 - 4726717
Alignment:
Q  25 ccatcaatgctacaatttaggccttcccacatataattcccaggaccacatggatctccttgccaatttctagccaccttataagcatccttgatgtttg 124  Q
    |||||||| || || |||| ||||||||||||||| ||| | ||||||||||||||||| |||||||| |||| ||||  |||||||| |||||||||||    
T  4726844 ccatcaatactgcagtttaagccttcccacatatatttcacgggaccacatggatctccctgccaattcctagtcaccccataagcattcttgatgtttg 4726745  T
Q  125 tgatagcatcaactagtatttggtattc 152  Q
    | |||| ||||||| ||||| |||||||    
T  4726744 tcatagtatcaacttgtattcggtattc 4726717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 4682034 - 4681922
Alignment:
Q  40 tttaggccttcccacatataattcccaggaccacatggatctccttgccaatttctagccaccttataagcatccttgatgtttgtgatagcatcaacta 139  Q
    |||||||||||||||||||| ||  | ||||||||||||||||| ||||||||||||||||||  ||| || | |||||||||| | |||| ||||||||    
T  4682034 tttaggccttcccacatatagtttactggaccacatggatctccctgccaatttctagccaccccataggccttcttgatgtttctcatagtatcaacta 4681935  T
Q  140 gtatttggtattc 152  Q
    |||||| ||||||    
T  4681934 gtatttcgtattc 4681922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 4874797 - 4874872
Alignment:
Q  72 acatggatctccttgccaatttctagccaccttataagcatccttgatgtttgtgatagcatcaactagtatttgg 147  Q
    ||||||||||||||||||||||||  |||||  |||||||| ||||||||||||||||| ||||||||||||||||    
T  4874797 acatggatctccttgccaatttctttccaccccataagcattcttgatgtttgtgatagtatcaactagtatttgg 4874872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 4704135 - 4704011
Alignment:
Q  26 catcaatgctacaatttaggccttcccacatataattcccaggaccacatggatctccttgccaatttctagccaccttataagcatccttgatgtttgt 125  Q
    |||||||  |||| |||| |||||||||||| |||||| ||||  ||||||||||||||||||||||||||| ||||  |||||  | |||||| ||  |    
T  4704135 catcaatagtacagtttacgccttcccacatgtaattcacagggacacatggatctccttgccaatttctagacaccccataagtgttcttgatattcat 4704036  T
Q  126 gatagcatcaactagtatttggtat 150  Q
    ||||| |||||||||||||| ||||    
T  4704035 gatagtatcaactagtatttcgtat 4704011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 4746037 - 4745993
Alignment:
Q  170 aaggttttaaagccaatttgcagatagtttactttacaccacaaa 214  Q
    |||| ||||||| ||||||||| ||||||||||||||||||||||    
T  4746037 aaggatttaaaggcaatttgcacatagtttactttacaccacaaa 4745993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 4726702 - 4726658
Alignment:
Q  170 aaggttttaaagccaatttgcagatagtttactttacaccacaaa 214  Q
    |||| ||| ||||||||||||| |||| |||||||||||||||||    
T  4726702 aaggatttcaagccaatttgcacatagcttactttacaccacaaa 4726658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University