View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19072_low_4 (Length: 369)
Name: NF19072_low_4
Description: NF19072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19072_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 359
Target Start/End: Complemental strand, 11316154 - 11315812
Alignment:
| Q |
17 |
caataagcaagtcggataatgtatgtatagaagaaagggtgtacatgaaatattatcctatttaattagacacaaatatggaagatattaagccagtgat |
116 |
Q |
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|||||||||||||||| ||||| |||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11316154 |
caataagcaagtcggacaatgtgtgtatagaagaaagtgtctacatgaaacactatcctatttaattagacacaaatatggaagatattaagccagtgat |
11316055 |
T |
|
| Q |
117 |
gtcatttgttgcagctatatacactacctggaaagtatattttagtaataacggtaaccaatgattctttttcttgttttcttgcacaccatgctcctca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11316054 |
gtcatttgttgcagctatatacactacctggaaagtatattttagtaataacggtaaccaatgattctttttcttgttttcttgcacaccatgctcctca |
11315955 |
T |
|
| Q |
217 |
tcctttatcttcttcacaataattccatcaaacacacttgaaagcattctcctatgttcctcaatttcatgttgttttgcatcctcatgattaacacgaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11315954 |
tcctttatcttcttcacaataattccatcaaacacacttgaaagcattctcctatgttcctcaatttcatgttgttttgcatcctcatgattaacacgaa |
11315855 |
T |
|
| Q |
317 |
gccagagtaaagtcaaaccaattgcatcattgatctttttctt |
359 |
Q |
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| T |
11315854 |
gccagagtaaagtcaaaccaattgcatcattgatctttttctt |
11315812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 11208308 - 11208384
Alignment:
| Q |
195 |
ttcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaagcattctcctat |
271 |
Q |
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||||| |||||||||| |||||||||||||| |||||| ||||||| |||||||||||||||||| || ||||||| |
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| T |
11208308 |
ttcttccacaccatgcccctcatcctttatcatcttcaaaataattggatcaaacacacttgaaagaatgctcctat |
11208384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 11155208 - 11155272
Alignment:
| Q |
196 |
tcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaag |
260 |
Q |
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||||||||||||||| |||||| |||||||||||||| |||| | ||||||| ||||||||||| |
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| T |
11155208 |
tcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacacttgaaag |
11155272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 11195655 - 11195719
Alignment:
| Q |
196 |
tcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaag |
260 |
Q |
| |
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||||||||||||||| |||||| |||||||||||||| |||| | ||||||| ||||||||||| |
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| T |
11195655 |
tcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacacttgaaag |
11195719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 11274872 - 11274946
Alignment:
| Q |
197 |
cttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaagcattctcctat |
271 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| | || |||| |||||||||||||||||| || ||||||| |
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| T |
11274872 |
cttgcacaccatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctcctat |
11274946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 11242246 - 11242178
Alignment:
| Q |
203 |
caccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaagcattctcctat |
271 |
Q |
| |
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|||||||| ||||||| || ||| || ||||||||||| |||||||||||||||||| || ||||||| |
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| T |
11242246 |
caccatgcccctcatctttgatcatcatcacaataattttatcaaacacacttgaaagaatgctcctat |
11242178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 11169486 - 11169551
Alignment:
| Q |
195 |
ttcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaag |
260 |
Q |
| |
|
||||||||||| ||| |||||||||||||| |||| | || |||| |||||||||||||||||| |
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| T |
11169486 |
ttcttgcacacaatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaag |
11169551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 20151514 - 20151557
Alignment:
| Q |
32 |
ataatgtatgtatagaagaaagggtgtacatgaaatattatcct |
75 |
Q |
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| T |
20151514 |
ataatgtatgtatggaaaaaaaggtgtacatgaaatattatcct |
20151557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 54713664 - 54713707
Alignment:
| Q |
32 |
ataatgtatgtatagaagaaagggtgtacatgaaatattatcct |
75 |
Q |
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||||||||||| | ||| |||||||||||||||||||||||||| |
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| T |
54713664 |
ataatgtatgtgtggaaaaaagggtgtacatgaaatattatcct |
54713707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 38754939 - 38754897
Alignment:
| Q |
32 |
ataatgtatgtatagaagaaagggtgtacatgaaatattatcc |
74 |
Q |
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||||||||||||| ||| ||| ||||||||||||||||||||| |
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| T |
38754939 |
ataatgtatgtatggaaaaaaaggtgtacatgaaatattatcc |
38754897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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