View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19072_low_8 (Length: 223)
Name: NF19072_low_8
Description: NF19072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19072_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 29021918 - 29022030
Alignment:
| Q |
18 |
tgaaagagaagcgagtcgaggtcaccatagtagcaccttaggtcgagagagttgaggttggagaatctagggaataagtcacaaaggaaaggtggtgttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29021918 |
tgaaagagaagcgagtcgaggtcaccatagtagcaccttaggtcgagagagttgaggttggagaatctagggaataagtcacaaaggaaaggtggtgttg |
29022017 |
T |
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| Q |
118 |
gatcatatatagt |
130 |
Q |
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||||||||||||| |
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| T |
29022018 |
gatcatatatagt |
29022030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 28661129 - 28661017
Alignment:
| Q |
18 |
tgaaagagaagcgagtcgaggtcaccatagtagcaccttaggtcgagagagttgaggttggagaatctagggaataagtcacaaaggaaaggtggtgttg |
117 |
Q |
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||||| ||||| ||||| |||| ||| ||||| || |||||||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||| |
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| T |
28661129 |
tgaaatagaagtgagtcaaggttaccgtagtaacatgttaggtcgagagagttcaggttggagaatctagggaatagactacagaggaagggtggtgttg |
28661030 |
T |
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| Q |
118 |
gatcatatatagt |
130 |
Q |
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||||||||||||| |
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| T |
28661029 |
gatcatatatagt |
28661017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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