View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19073_high_10 (Length: 471)

Name: NF19073_high_10
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19073_high_10
NF19073_high_10
[»] chr2 (3 HSPs)
chr2 (13-366)||(9809348-9809703)
chr2 (13-366)||(16248334-16248679)
chr2 (120-366)||(45623117-45623362)
[»] chr7 (4 HSPs)
chr7 (13-231)||(39939921-39940139)
chr7 (282-452)||(39939082-39939252)
chr7 (203-254)||(27128904-27128956)
chr7 (320-366)||(36325328-36325374)
[»] chr8 (2 HSPs)
chr8 (92-366)||(34578464-34578740)
chr8 (92-265)||(7934943-7935117)
[»] chr3 (2 HSPs)
chr3 (258-367)||(52623568-52623679)
chr3 (320-366)||(54725462-54725508)
[»] chr4 (1 HSPs)
chr4 (13-366)||(31888649-31888994)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 366
Target Start/End: Complemental strand, 9809703 - 9809348
Alignment:
Q  13 aatattgtcaaggggaaaaggcttgatctgcttctcaatgattttaaacatttaatcatgttattttgtttgaagactaagattatttgtggttatggtg 112  Q
    |||||||||||||||||||| |||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||||||||||||||||||||    
T  9809703 aatattgtcaaggggaaaagacttgatttgcttctcaatgattttagacatttattcatgttaatttgtttgaagaccaagattatttgtggttatggtg 9809604  T
Q  113 cctatggacctgtcgaagaagaagatagaggattgagaaagagagtccgcgaaaattgaaggnnnnnnntgaataatacaaacttttatttctcctgtaa 212  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||       |||||||||||||||||| | |||||| |||    
T  9809603 cctatggacctgttgaagaagaagatagaggattgagaaagagagtccccgaaaattgaaggaaaaaaatgaataatacaaacttttctctctcctctaa 9809504  T
Q  213 ttttctcttcccttttgtgtctcaacctttagatcaatccaagagtttagaatggtacaaaac--acaacattgttttaaaaggcacgaggggatcattt 310  Q
    ||||||||||||| |||||||||||||||||||| |||| ||||||||||||| |||||| ||  ||||||||||||||||||||| |||||||||||||    
T  9809503 ttttctcttccctcttgtgtctcaacctttagatgaatctaagagtttagaattgtacaagacaaacaacattgttttaaaaggcatgaggggatcattt 9809404  T
Q  311 cctaagagcggtacaaatgtggtatgccacctaagtatgtccacctatcatcactc 366  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  9809403 cctaagagtggtacaaaggtggtatgccacctaagcatgtccacctatcatcactc 9809348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 366
Target Start/End: Complemental strand, 16248679 - 16248334
Alignment:
Q  13 aatattgtcaaggggaaaaggcttgatctgcttctcaatgattttaaacatttaatcatgttattttgtttgaagactaagattatttgtg--gttatgg 110  Q
    |||||||||||||| | |||||||||| |||||||||||||||| | |||||          ||||||||||||||| |||||||| ||||  | |||||    
T  16248679 aatattgtcaagggaagaaggcttgatatgcttctcaatgatttcagacatt----------attttgtttgaagaccaagattatgtgtgtggctatgg 16248590  T
Q  111 tgcctatgga-cctgtcgaagaagaagatagaggattgagaaagagagtccgcgaaaattgaaggnnnnnnntgaataatacaaacttttatttctcctg 209  Q
    | |||||||| ||||| ||||||||||| |||||||||||||| | || || |||||||||||||       ||||||  |||||||||| | ||||||     
T  16248589 ttcctatggaacctgttgaagaagaagagagaggattgagaaataaagcccacgaaaattgaagg--aaaaatgaataggacaaacttttctctctcctc 16248492  T
Q  210 taattttctcttcccttttgtgtctcaacctttagatcaatccaagagtttagaatggtaca--aaacacaacattgttttaaaaggcacgaggggatca 307  Q
    ||||||||||||||| | || |||||||||||||||||||||||| |||  |||||   |||  | ||||||||     ||||||||||  |||||||||    
T  16248491 taattttctcttccc-tctgcgtctcaacctttagatcaatccaacagtccagaatttcacaagacacacaacaggacattaaaaggcagtaggggatca 16248393  T
Q  308 t-ttcctaagagcggtacaaatgtggtatgccacctaagtatgtccacctatcatcactc 366  Q
    | | |||||| | |||||||| ||||||||||||||||||||||  |||||||| |||||    
T  16248392 tatccctaagggtggtacaaa-gtggtatgccacctaagtatgtttacctatcaccactc 16248334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 120 - 366
Target Start/End: Complemental strand, 45623362 - 45623117
Alignment:
Q  120 acctgtcgaagaagaagatagaggattgagaaagagagtccgcgaaaattgaaggnnnnnnntgaataatacaaacttttatttctcctgtaattttctc 219  Q
    |||||| ||||||||||| |||||||||||||||| || || | |||||||||||       ||||||  | | |||||| | |||||  ||||||||||    
T  45623362 acctgttgaagaagaagagagaggattgagaaagaaagcccacaaaaattgaaggaaaata-tgaataggatagacttttctctctcccctaattttctc 45623264  T
Q  220 ttcccttttgtgtctcaacctttagatcaatccaagagtttagaatggtacaaaac--acaacattgttttaaaaggcacgaggggatcat-ttcctaag 316  Q
    |||||| | ||||||||||||||||||||||||||   | |||||| | |||| ||  |||||||  | |||||| ||| ||| ||||||| | ||||||    
T  45623263 ttccctct-gtgtctcaacctttagatcaatccaaagatctagaattgcacaagacatacaacatgatattaaaa-gcaggagaggatcatatccctaag 45623166  T
Q  317 agcggtacaaatgtggtatgccacctaagtatgtccacctatcatcactc 366  Q
     | |||||||| ||||||||||||||||||||||  |||||||| |||||    
T  45623165 ggtggtacaaa-gtggtatgccacctaagtatgtatacctatcaccactc 45623117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 39939921 - 39940139
Alignment:
Q  13 aatattgtcaaggggaaaaggcttgatctgcttctcaatgattttaaacatttaatcatgttattttgtttgaagactaagattatttgtggttatggtg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||    
T  39939921 aatattgtcaaggggaaaaggcttgatctgcttctcaatgattttaaacatttattcatgttattttgtttgaagaccaatattatttgtggttatggtg 39940020  T
Q  113 cctatggacctgtcgaagaagaagatagaggattgagaaagagagtccgcgaaaattgaaggnnnnnnntgaataatacaaacttttatttctcctgtaa 212  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||| |||    
T  39940021 cctatggatctgttgaagaagaagatagaggattgagaaagagagtccgcgaaaattgaaggaaaaaaatgaataatacaaacttttatctctcctctaa 39940120  T
Q  213 ttttctcttcccttttgtg 231  Q
    ||||||||||||| |||||    
T  39940121 ttttctcttccctcttgtg 39940139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 282 - 452
Target Start/End: Complemental strand, 39939252 - 39939082
Alignment:
Q  282 ttgttttaaaaggcacgaggggatcatttcctaagagcggtacaaatgtggtatgccacctaagtatgtccacctatcatcactcattttttatccacaa 381  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39939252 ttgttttaaaaggcacgaggggatcatttcctaagagtggtacaaaggtggtatgccacctaagtatgtccacctatcatcactcattttttatccacaa 39939153  T
Q  382 acaaaaaactcataaatgcatgctaaactataataaacctatagaccggagagtagagtgtacatgtgatc 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39939152 acaaaaaactcataaatgcatgctaaactataataaacctatagaccggagagtagagtgtacatgtgatc 39939082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 27128904 - 27128956
Alignment:
Q  203 tctcctgtaattttctcttccct-tttgtgtctcaacctttagatcaatccaa 254  Q
    |||||| |||||||||||| ||| |||||||||||||||||||||||||||||    
T  27128904 tctcctctaattttctctttcctctttgtgtctcaacctttagatcaatccaa 27128956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 36325374 - 36325328
Alignment:
Q  320 ggtacaaatgtggtatgccacctaagtatgtccacctatcatcactc 366  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  36325374 ggtacaaaggtggtatgccacctaaggatgtcaacctatcatcactc 36325328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 92 - 366
Target Start/End: Complemental strand, 34578740 - 34578464
Alignment:
Q  92 agattatttgtggttatggtgcctatgga-cctgtcgaagaagaagatagaggattgagaaagagagtccgcgaaaattgaaggnnnnnnntgaataata 190  Q
    ||||||||||||| ||| || |||||||| ||||| ||||||||||| |||||||||||||||| || || |||||||||||||       ||||||  |    
T  34578740 agattatttgtggctatagttcctatggaacctgttgaagaagaagagagaggattgagaaagaaagcccacgaaaattgaaggaaaata-tgaatagga 34578642  T
Q  191 caaacttttatttctcctgtaattttctcttccct-tttgtgtctcaacctttagatcaatccaagagtttagaatggtacaaaac--acaacattgttt 287  Q
     | |||||| | |||||  |||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| | |||| ||  |||||||  | |    
T  34578641 tagacttttctctctcccttaattttctcttccctctttgtgtctcaacctttagatcaatccaacagtctagaattgcacaagacatacaacatgatat 34578542  T
Q  288 taaaaggcacgaggggatcat-ttcctaagagcggtacaaatgtggtatgccacctaagtatgtccacctatcatcactc 366  Q
    ||||| ||| ||||||||||| | |||||| | |||||||| ||||||||||||||||||||||  |||||||| |||||    
T  34578541 taaaa-gcaggaggggatcatatccctaagggtggtacaaa-gtggtatgccacctaagtatgtatacctatcaccactc 34578464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 92 - 265
Target Start/End: Original strand, 7934943 - 7935117
Alignment:
Q  92 agattatttgtggttatggtgcctatgga-cctgtcgaagaagaagatagaggattgagaaagagagtccgcgaaaattgaaggnnnnnnntgaataata 190  Q
    ||||||||||||| |||||| |||||||| ||||| ||||||||||| |||||||||||||||| || || |||||||||||||       || |||  |    
T  7934943 agattatttgtggatatggttcctatggaacctgttgaagaagaagagagaggattgagaaagaaagcccacgaaaattgaagg-aaaatatgtatagga 7935041  T
Q  191 caaacttttatttctcctgtaattttctcttccct-tttgtgtctcaacctttagatcaatccaagagtttagaat 265  Q
     | |||||| | |||||  |||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  7935042 tagacttttctctctcccctaattttctcttccctctttgtgtctcaacctttagatcaatccaacagtctagaat 7935117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 258 - 367
Target Start/End: Original strand, 52623568 - 52623679
Alignment:
Q  258 tttagaatggtacaaaaca--caacattgttttaaaaggcacgaggggatcatttcctaagagcggtacaaatgtggtatgccacctaagtatgtccacc 355  Q
    |||||||| |||||| |||  |||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  52623568 tttagaattgtacaagacaaacaacattgttttaaaaggcaagaggggatcatttcctaagagtggtacaaaggtggtatgccacctaagcatgtccacc 52623667  T
Q  356 tatcatcactca 367  Q
    ||||||||||||    
T  52623668 tatcatcactca 52623679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 54725462 - 54725508
Alignment:
Q  320 ggtacaaatgtggtatgccacctaagtatgtccacctatcatcactc 366  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  54725462 ggtacaaaggtggtatgccacctaaggatgtcaacctatcatcactc 54725508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 366
Target Start/End: Original strand, 31888649 - 31888994
Alignment:
Q  13 aatattgtcaaggggaaaaggcttgatctgcttctcaatgattttaaacatttaatcatgttattttgtttgaagactaagattatttgtg--gttatgg 110  Q
    |||||||||||||| | |||||||||| |||||||||||||||| | |||||          ||||| ||||||||| |||||||| ||||  | |||||    
T  31888649 aatattgtcaagggaagaaggcttgatatgcttctcaatgatttcagacatt----------attttttttgaagaccaagattatgtgtgtggctatgg 31888738  T
Q  111 tgcctatgga-cctgtcgaagaagaagatagaggattgagaaagagagtccgcgaaaattgaaggnnnnnnntgaataatacaaacttttatttctcctg 209  Q
    | |||||||| ||||| ||||||||||| |||||||||||||| | || || | |||||||||||       ||||||  |||||||||| | ||||||     
T  31888739 ttcctatggaacctgttgaagaagaagagagaggattgagaaataaagcccactaaaattgaagg--aaaaatgaataggacaaacttttctctctcctc 31888836  T
Q  210 taattttctcttcccttttgtgtctcaacctttagatcaatccaagagtttagaatggtaca--aaacacaacattgttttaaaaggcacgaggggatca 307  Q
    ||||||||||||||| | || |||||||||||||||||||||||| |||  |||||   |||  | ||||||||     ||||||||||  |||||||||    
T  31888837 taattttctcttccc-tctgcgtctcaacctttagatcaatccaacagtccagaatttcacaagacacacaacaggacattaaaaggcagtaggggatca 31888935  T
Q  308 t-ttcctaagagcggtacaaatgtggtatgccacctaagtatgtccacctatcatcactc 366  Q
    | | |||||| | | |||||| ||||||||||||||||||||||  |||||||| |||||    
T  31888936 tatccctaagggtgttacaaa-gtggtatgccacctaagtatgtttacctatcaccactc 31888994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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