View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19073_high_12 (Length: 431)
Name: NF19073_high_12
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19073_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 6586862 - 6587274
Alignment:
| Q |
1 |
gacctactattattttccaattataggattgggaaatgtacaatccaaactattaattggcatcatatatctattggattatcataatagtnnnnnnnnt |
100 |
Q |
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| T |
6586862 |
gacctactattattttccaattataggattcggaaatgtacaatccaaactattaattggcatcatatatctattggattatcataatagtaaaaaaaaa |
6586961 |
T |
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| Q |
101 |
attctgccatttttctttaaacnnnnnnnatagaaccatcaaataaaaaggatcttaagttcatagttttcactaacaataacagatatcaacattaacc |
200 |
Q |
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| T |
6586962 |
attctgccatttttctttaaactttttttatagaaccatcaaataaaaaggatgttaagttcatagttttcactaacaataacagatatcaacattaaac |
6587061 |
T |
|
| Q |
201 |
ggtttaattttaaatcatccctagggaacttttgctggtgttaggccttgctgtactctaatttaatagggatctggttagagtttcacccacatgcacc |
300 |
Q |
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| T |
6587062 |
ggtttaattttaaatcatccctagggaacttttgctggtgttaggccttgctgtactctaatttaatagggatctggttagagtttcacccacatgcacc |
6587161 |
T |
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| Q |
301 |
ggttcttaatgaattcatgttagaattctgttaacaagataactgaatcagtcatcctaattaaaccttacatatagtggcaatccttgttattaggttc |
400 |
Q |
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| T |
6587162 |
ggttcttaatgaattcttgttagaattctgttaacaagataactgaatcagtcatcctaattaaaccttacatatagtggcaatccttgttattaggttc |
6587261 |
T |
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| Q |
401 |
ttaaatgttttct |
413 |
Q |
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| T |
6587262 |
ttaaatgttttct |
6587274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 6436659 - 6436578
Alignment:
| Q |
165 |
agttttcactaacaataacagatatcaacattaaccggtttaatt-ttaaatcatccctagggaacttttgctggtgttagg |
245 |
Q |
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| T |
6436659 |
agttttcacaaataataaaagatatcaacacttacctgtttaattattaaattatcgctagggaactttttcttgtgttagg |
6436578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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