View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19073_high_14 (Length: 420)

Name: NF19073_high_14
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19073_high_14
NF19073_high_14
[»] chr4 (21 HSPs)
chr4 (130-333)||(5195097-5195300)
chr4 (169-331)||(5181738-5181900)
chr4 (130-335)||(5159467-5159657)
chr4 (131-274)||(4843028-4843172)
chr4 (165-274)||(5172485-5172594)
chr4 (332-419)||(5172709-5172796)
chr4 (332-419)||(5182041-5182128)
chr4 (332-419)||(4842729-4842816)
chr4 (332-419)||(5159793-5159880)
chr4 (170-269)||(5212716-5212815)
chr4 (332-419)||(5195435-5195522)
chr4 (17-99)||(5182068-5182153)
chr4 (333-419)||(5213602-5213688)
chr4 (17-89)||(5213628-5213703)
chr4 (17-99)||(5159820-5159905)
chr4 (17-99)||(5195462-5195547)
chr4 (17-99)||(5172736-5172821)
chr4 (56-99)||(4842704-4842747)
chr4 (96-128)||(5159942-5159974)
chr4 (96-128)||(5182190-5182222)
chr4 (96-128)||(5195584-5195616)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 6e-78; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 130 - 333
Target Start/End: Original strand, 5195097 - 5195300
Alignment:
Q  130 aattatatctctaactatttactcttttttctatctttttgcagatgttcaacatttgaaaaatttgaaaatcttaagtttaagcaagaatcaaatgaac 229  Q
    |||||||||||||||||| |||||| |||| | |  || ||||||||||||||||||||||||||||||||| |||||||||| | | ||||||||||||    
T  5195097 aattatatctctaactatgtactctctttttttttcttctgcagatgttcaacatttgaaaaatttgaaaatgttaagtttaaacgataatcaaatgaac 5195196  T
Q  230 ggctcaattgaaggtatcaatactaccaaacacaaataattaattcataactgcttcacaggatggttttggggatggattgttacaatgaagataactt 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||    
T  5195197 ggctcaattgaaggtatcaatactaccaaacacaaataattaattcataattgcttcacgggatggttttggggatcgattgttacaatgaagataactt 5195296  T
Q  330 tttt 333  Q
    ||||    
T  5195297 tttt 5195300  T

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Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 169 - 331
Target Start/End: Original strand, 5181738 - 5181900
Alignment:
Q  169 tgcagatgttcaacatttgaaaaatttgaaaatcttaagtttaagcaagaatcaaatgaacggctcaattgaaggtatcaatactaccaaacacaaataa 268  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5181738 tgcagatgttcaacatttgaaaaacttgaaaatgttaagtttaagaaataatcaaatgaacggctcaattgaaggtatcaatactaccaaacacaaataa 5181837  T
Q  269 ttaattcataactgcttcacaggatggttttggggatggattgttacaatgaagataactttt 331  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5181838 ttaattcataattgcttcacgggatggttttggggatggattgttacaatgaagataactttt 5181900  T

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Target: chr4; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 130 - 335
Target Start/End: Original strand, 5159467 - 5159657
Alignment:
Q  130 aattatatctctaactatttactcttttttctatctttttgcagatgttcaacatttgaaaaatttgaaaatcttaagtttaagcaagaatcaaatgaac 229  Q
    |||||||||||||||||| |||||| |||| |   ||| |||||||||||||||||||||||| |||||||| |||| ||||||| | ||||||||||||    
T  5159467 aattatatctctaactatgtactctctttttt---tttctgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaac 5159563  T
Q  230 ggctcaattgaaggtatcaatactaccaaacacaaataattaattcataactgcttcacaggatggttttggggatggattgttacaatgaagataactt 329  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||    
T  5159564 ggctcaattgaaggtatgaatactaccaaacacaaataattaattcataactgcttcac------------gggatggattgttacaatgaagataactt 5159651  T

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Target: chr4; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 131 - 274
Target Start/End: Complemental strand, 4843172 - 4843028
Alignment:
Q  131 attatatctctaactatttactcttttttctatcttttt-gcagatgttcaacatttgaaaaatttgaaaatcttaagtttaagcaagaatcaaatgaac 229  Q
    ||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||||| |||||| | |||||||||||     
T  4843172 attatatctctaactatgtactcttttttctttcttttttgcagatgttcaacatttgaaaaacttgaaaatgttaaggttaagcgataatcaaatgaag 4843073  T
Q  230 ggctcaattgaaggtatcaatactaccaaacacaaataattaatt 274  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||    
T  4843072 ggctcaattgaaggtatcaatactatcaaacataaataattaatt 4843028  T

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Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 165 - 274
Target Start/End: Original strand, 5172485 - 5172594
Alignment:
Q  165 tttttgcagatgttcaacatttgaaaaatttgaaaatcttaagtttaagcaagaatcaaatgaacggctcaattgaaggtatcaatactaccaaacacaa 264  Q
    ||||||||||||||||||| |||||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||| ||    
T  5172485 tttttgcagatgttcaacacttgaaaaaattgaaaatgttaagtttaagctataatcaaatgaacggctcaattgaaggtatcaatactatcaaacataa 5172584  T
Q  265 ataattaatt 274  Q
    ||||||||||    
T  5172585 ataattaatt 5172594  T

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Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 332 - 419
Target Start/End: Original strand, 5172709 - 5172796
Alignment:
Q  332 ttatgacaggactatgcaatttaaaggatttggtagaactggatatcagctgtaacatgtttggtgctaaacttcctgagtgtttaag 419  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||    
T  5172709 ttatgacaggactatgcaatttgaaggatttggtagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaag 5172796  T

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Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 332 - 419
Target Start/End: Original strand, 5182041 - 5182128
Alignment:
Q  332 ttatgacaggactatgcaatttaaaggatttggtagaactggatatcagctgtaacatgtttggtgctaaacttcctgagtgtttaag 419  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| ||||||||||||| |||||||||||    
T  5182041 ttatgacaggactatgcaatttgaaggatttggtagaattggatatcagctataacatgtttagtgctaaacttccagagtgtttaag 5182128  T

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Target: chr4; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 332 - 419
Target Start/End: Complemental strand, 4842816 - 4842729
Alignment:
Q  332 ttatgacaggactatgcaatttaaaggatttggtagaactggatatcagctgtaacatgtttggtgctaaacttcctgagtgtttaag 419  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||   ||||||||||| |||||||||||||||||||||||    
T  4842816 ttatgacaggactatgcaatttgaaggatttggaagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaag 4842729  T

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Target: chr4; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 332 - 419
Target Start/End: Original strand, 5159793 - 5159880
Alignment:
Q  332 ttatgacaggactatgcaatttaaaggatttggtagaactggatatcagctgtaacatgtttggtgctaaacttcctgagtgtttaag 419  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||   ||||||||| |||||||| ||||||||||||||||    
T  5159793 ttatgacaggactatgcaatttgaaggatttggtagaactggatatcagccagaacatgtttagtgctaaatttcctgagtgtttaag 5159880  T

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Target: chr4; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 170 - 269
Target Start/End: Original strand, 5212716 - 5212815
Alignment:
Q  170 gcagatgttcaacatttgaaaaatttgaaaatcttaagtttaagcaagaatcaaatgaacggctcaattgaaggtatcaatactaccaaacacaaataat 269  Q
    ||||||||||||||||||| ||| ||||||||  |||||||| |||| |||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  5212716 gcagatgttcaacatttgagaaacttgaaaatgctaagtttatgcaacaatcaaatgaacggctcacttgaaggtattaatattaccaaacacaaataat 5212815  T

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Target: chr4; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 332 - 419
Target Start/End: Original strand, 5195435 - 5195522
Alignment:
Q  332 ttatgacaggactatgcaatttaaaggatttggtagaactggatatcagctgtaacatgtttggtgctaaacttcctgagtgtttaag 419  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||   ||||||||| ||||||||||||| || ||||||||    
T  5195435 ttatgacaggactatgcaattttaaggatttggtagaactggatatcagcaaaaacatgtttagtgctaaacttccagattgtttaag 5195522  T

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Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 5182068 - 5182153
Alignment:
Q  17 atttggtagaattggatatcagctataacatgttta-agc--aacttcccgagtgtttaagcaacttaacaaacctcagagttctt 99  Q
    ||||||||||||||||||||||||||||||||||||  ||  ||||||| |||||||||||||||||||||||||| |||||||||    
T  5182068 atttggtagaattggatatcagctataacatgtttagtgctaaacttccagagtgtttaagcaacttaacaaaccttagagttctt 5182153  T

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Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 419
Target Start/End: Original strand, 5213602 - 5213688
Alignment:
Q  333 tatgacaggactatgcaatttaaaggatttggtagaactggatatcagctgtaacatgtttggtgctaaacttcctgagtgtttaag 419  Q
    |||||||||||||||||| || |||||||||||||| || |||||||||| |||||||||| | ||  ||||||| |||||||||||    
T  5213602 tatgacaggactatgcaaattgaaggatttggtagagctagatatcagctataacatgtttagcgcgcaacttcccgagtgtttaag 5213688  T

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Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 5213628 - 5213703
Alignment:
Q  17 atttggtagaattggatatcagctataacatgtttaa---gcaacttcccgagtgtttaagcaacttaacaaacct 89  Q
    ||||||||||  | ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||    
T  5213628 atttggtagagctagatatcagctataacatgtttagcgcgcaacttcccgagtgtttaagcaacttaacaaacct 5213703  T

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Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 5159820 - 5159905
Alignment:
Q  17 atttggtagaattggatatcagctataacatgtttaa-gc--aacttcccgagtgtttaagcaacttaacaaacctcagagttctt 99  Q
    ||||||||||| ||||||||||| | ||||||||||  ||  || |||| ||||||||||||||||||||||||||||||||||||    
T  5159820 atttggtagaactggatatcagccagaacatgtttagtgctaaatttcctgagtgtttaagcaacttaacaaacctcagagttctt 5159905  T

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Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 5195462 - 5195547
Alignment:
Q  17 atttggtagaattggatatcagctataacatgtttaa-gc--aacttcccgagtgtttaagcaacttaacaaacctcagagttctt 99  Q
    ||||||||||| ||||||||||| | ||||||||||  ||  ||||||| || |||||||||||||||||||||||||||||||||    
T  5195462 atttggtagaactggatatcagcaaaaacatgtttagtgctaaacttccagattgtttaagcaacttaacaaacctcagagttctt 5195547  T

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Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 5172736 - 5172821
Alignment:
Q  17 atttggtagaattggatatcagctataacatgtttaagc---aacttcccgagtgtttaagcaacttaacaaacctcagagttctt 99  Q
    ||||||||||| ||||||||||| | |||||||||  |    ||||||| ||||||||||| |||||||||||||||||| |||||    
T  5172736 atttggtagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaacaaacctcagaattctt 5172821  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 4842747 - 4842704
Alignment:
Q  56 aacttcccgagtgtttaagcaacttaacaaacctcagagttctt 99  Q
    ||||||| ||||||||||| |||||||||||||||||| |||||    
T  4842747 aacttcctgagtgtttaagtaacttaacaaacctcagaattctt 4842704  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 5159942 - 5159974
Alignment:
Q  96 tctttccttagcaatctcacatcactggcatac 128  Q
    |||||| ||||||||||||||||||||||||||    
T  5159942 tctttcattagcaatctcacatcactggcatac 5159974  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 5182190 - 5182222
Alignment:
Q  96 tctttccttagcaatctcacatcactggcatac 128  Q
    |||||| ||||||||||||||||||||||||||    
T  5182190 tctttcattagcaatctcacatcactggcatac 5182222  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 5195584 - 5195616
Alignment:
Q  96 tctttccttagcaatctcacatcactggcatac 128  Q
    |||||| ||||||||||||||||||||||||||    
T  5195584 tctttcattagcaatctcacatcactggcatac 5195616  T

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