View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19073_high_15 (Length: 417)
Name: NF19073_high_15
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19073_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 2928770 - 2929180
Alignment:
| Q |
1 |
tgtcaagagtcacgatgaatccgcaatcgcggccacaatttaaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaa-gtcataaaa |
99 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2928770 |
tgtcaagagtcacaatgaattcgcaatcgcggccacaatttaaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaaagtcataaaa |
2928869 |
T |
|
| Q |
100 |
tacctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttcccattgggaaaacatccgaca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2928870 |
tacctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttcccattgggaaaacatccgaca |
2928969 |
T |
|
| Q |
200 |
gacatattagttnnnnnnnctaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattttgtttctctctctca |
299 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2928970 |
gacatattagttaaaaaaactaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattttgtttctctctctca |
2929069 |
T |
|
| Q |
300 |
gcaatgcatcaataatattgttgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtttgtattcttc |
399 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2929070 |
gcaatgcatcaataatattattgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtttgtattcttc |
2929169 |
T |
|
| Q |
400 |
aaagccctttg |
410 |
Q |
| |
|
||||||||||| |
|
|
| T |
2929170 |
aaagccctttg |
2929180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 3 - 407
Target Start/End: Complemental strand, 2310265 - 2309867
Alignment:
| Q |
3 |
tcaagagtcacgatgaatccgcaatcgcggccacaatttaaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaagtcataaaatac |
102 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2310265 |
tcaagagttacaatgaatccgcaatcgcggccgcaatttaaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaaatcataaaatac |
2310166 |
T |
|
| Q |
103 |
ctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttcccattgggaaaacatccgacagac |
202 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||||| | ||||||| | |||| |
|
|
| T |
2310165 |
ctcacgtgcaattaaggttgctttctctgcatcacttggaaaaggcttaaccaaatcccagcttagacctatcttcccattagcaaaacatgtgccagat |
2310066 |
T |
|
| Q |
203 |
atattagttnnnnnnnctaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattttgtttctctctctcagca |
302 |
Q |
| |
|
|||| || | |||||| |||||||||||||||||||||||||||||| || | ||||||| |||||||||| ||||| ||||| ||| |
|
|
| T |
2310065 |
atataaggtaaaaaaactaccacaacctcccaatttaatccatccaaatgtgacat------attagattcagggctcattttctttctttctctttgca |
2309972 |
T |
|
| Q |
303 |
atgcatcaataatattgttgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtttgtattcttcaaa |
402 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2309971 |
atgcatcaattatattattgagaatctttgtatgccttacactttcttgataggtttgaggcattgtacgtccttcaaacctttgtttgtattcttcaaa |
2309872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 21959878 - 21959920
Alignment:
| Q |
97 |
aaatacctcatgtgcaattatagttgctttctctgcatcactt |
139 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||||||||||||| |
|
|
| T |
21959878 |
aaatacctcatgtccaataatagttgctatctctgcatcactt |
21959920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 904889 - 904847
Alignment:
| Q |
97 |
aaatacctcatgtgcaattatagttgctttctctgcatcactt |
139 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||||||||||||| |
|
|
| T |
904889 |
aaatacctcatgtccaataatagttgctatctctgcatcactt |
904847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University