View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19073_high_16 (Length: 388)
Name: NF19073_high_16
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19073_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 202 - 375
Target Start/End: Complemental strand, 8651287 - 8651114
Alignment:
| Q |
202 |
aaacagtcctaactgaaaccaggtggttgatgcgttttagttaagataaaatcgtttgagtaatactcgagtttgattccacactaaaacagtccttcat |
301 |
Q |
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| T |
8651287 |
aaacagtcctaactgaaaccaggtggttgatgcgttttagttaagataaaatcgtttgagtaatactcgagtttgattccacactaaaacagtccttcat |
8651188 |
T |
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| Q |
302 |
catcagactttgattatctttcagctgaactctacactttactacaaagaaaagaaatccatagtttgttcttc |
375 |
Q |
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| T |
8651187 |
catcagactttcattatctttcagctgaactctacactttactacaaagaaaagaaatccgtagtttgttcttc |
8651114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 8651488 - 8651349
Alignment:
| Q |
1 |
tgtgaaccgaactgtactaaattactattattaacttgaaccaaacataaactctccgtaaaaaaccgaattgtgacagatagttcatgaactgagtcaa |
100 |
Q |
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| T |
8651488 |
tgtgaaccgaactgtactaaattactattattaacttgaaccaaacataaactctccgtaaaaaaccgaattgtgacagatagttcatgaactgagtcaa |
8651389 |
T |
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| Q |
101 |
gctaaaccgaactggttctgtttgtaaactgtatgtcaca |
140 |
Q |
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| T |
8651388 |
gctaaaccgaactggttctgtttgtaaactgtaagtcaca |
8651349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28990126 - 28990092
Alignment:
| Q |
1 |
tgtgaaccgaactgtactaaattactattattaac |
35 |
Q |
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| T |
28990126 |
tgtgaaccgaattgtactaaattactattattaac |
28990092 |
T |
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