View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19073_high_17 (Length: 387)

Name: NF19073_high_17
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19073_high_17
NF19073_high_17
[»] scaffold0023 (1 HSPs)
scaffold0023 (308-353)||(125565-125610)
[»] chr5 (16 HSPs)
chr5 (309-357)||(26404867-26404915)
chr5 (308-343)||(10542041-10542076)
chr5 (308-343)||(10691043-10691078)
chr5 (308-343)||(13952458-13952493)
chr5 (308-351)||(16867752-16867795)
chr5 (308-343)||(21000354-21000389)
chr5 (308-343)||(22634117-22634152)
chr5 (308-343)||(22634367-22634402)
chr5 (308-343)||(38941446-38941481)
chr5 (308-342)||(23294756-23294790)
chr5 (308-346)||(26006510-26006548)
chr5 (308-346)||(26524643-26524681)
chr5 (308-345)||(29989715-29989752)
chr5 (309-345)||(6802074-6802110)
chr5 (311-343)||(14946657-14946689)
chr5 (308-340)||(40616447-40616479)
[»] chr3 (12 HSPs)
chr3 (308-352)||(5154712-5154756)
chr3 (308-347)||(39937012-39937051)
chr3 (310-350)||(43674174-43674214)
chr3 (308-343)||(51659055-51659090)
chr3 (308-346)||(7014978-7015016)
chr3 (308-346)||(32858407-32858445)
chr3 (308-345)||(7731268-7731305)
chr3 (308-352)||(5047158-5047202)
chr3 (308-340)||(16871424-16871456)
chr3 (310-346)||(23043125-23043161)
chr3 (310-346)||(25024920-25024956)
chr3 (308-344)||(37585635-37585671)
[»] scaffold0043 (2 HSPs)
scaffold0043 (308-351)||(47062-47105)
scaffold0043 (308-345)||(47324-47361)
[»] chr1 (12 HSPs)
chr1 (308-343)||(16985440-16985475)
chr1 (308-343)||(6954130-6954165)
chr1 (310-345)||(26712008-26712043)
chr1 (308-351)||(29525615-29525658)
chr1 (308-343)||(43703010-43703045)
chr1 (308-346)||(15734471-15734509)
chr1 (312-346)||(48759699-48759733)
chr1 (308-346)||(51237959-51237997)
chr1 (310-343)||(9403322-9403355)
chr1 (311-348)||(15734814-15734851)
chr1 (309-346)||(49613784-49613821)
chr1 (312-348)||(5613714-5613750)
[»] chr4 (13 HSPs)
chr4 (308-346)||(17697151-17697189)
chr4 (308-345)||(3238413-3238450)
chr4 (308-345)||(19495409-19495446)
chr4 (308-343)||(4758451-4758486)
chr4 (312-343)||(6788143-6788174)
chr4 (308-343)||(10264398-10264433)
chr4 (308-343)||(15323680-15323715)
chr4 (308-343)||(20569899-20569934)
chr4 (308-343)||(40269804-40269839)
chr4 (308-342)||(23573388-23573422)
chr4 (309-343)||(49236326-49236360)
chr4 (308-345)||(19291596-19291633)
chr4 (322-355)||(54553072-54553105)
[»] chr2 (20 HSPs)
chr2 (308-346)||(20513666-20513704)
chr2 (308-350)||(40452173-40452215)
chr2 (308-349)||(7511341-7511382)
chr2 (308-345)||(28192295-28192332)
chr2 (308-343)||(39257154-39257189)
chr2 (308-346)||(24388854-24388892)
chr2 (308-346)||(25890544-25890582)
chr2 (308-346)||(33010795-33010833)
chr2 (312-346)||(34828901-34828935)
chr2 (309-346)||(6748971-6749008)
chr2 (311-348)||(12883335-12883372)
chr2 (310-343)||(20025572-20025605)
chr2 (308-345)||(22265133-22265170)
chr2 (310-343)||(39164981-39165014)
chr2 (308-341)||(40926929-40926962)
chr2 (308-344)||(5513482-5513518)
chr2 (308-352)||(20101009-20101053)
chr2 (310-346)||(33216640-33216676)
chr2 (308-344)||(34963603-34963639)
chr2 (312-356)||(39163810-39163854)
[»] chr6 (14 HSPs)
chr6 (310-343)||(20222561-20222594)
chr6 (310-343)||(22116545-22116578)
chr6 (308-343)||(2255363-2255398)
chr6 (308-343)||(18698999-18699034)
chr6 (308-343)||(25948630-25948665)
chr6 (308-343)||(32276336-32276371)
chr6 (308-346)||(9964350-9964388)
chr6 (308-346)||(15502524-15502562)
chr6 (308-346)||(28632017-28632055)
chr6 (309-343)||(30240816-30240850)
chr6 (311-348)||(9865282-9865319)
chr6 (312-348)||(4212704-4212740)
chr6 (308-344)||(4407867-4407903)
chr6 (310-346)||(27660627-27660663)
[»] scaffold0035 (1 HSPs)
scaffold0035 (308-343)||(72429-72464)
[»] chr8 (7 HSPs)
chr8 (308-343)||(15113875-15113910)
chr8 (308-342)||(6162947-6162981)
chr8 (308-346)||(22981059-22981097)
chr8 (312-349)||(33330853-33330890)
chr8 (308-345)||(40628424-40628461)
chr8 (312-345)||(43897703-43897736)
chr8 (312-344)||(43898813-43898845)
[»] chr7 (11 HSPs)
chr7 (308-347)||(4098093-4098132)
chr7 (308-343)||(7881416-7881451)
chr7 (312-343)||(13593469-13593500)
chr7 (308-343)||(17358004-17358039)
chr7 (308-346)||(23775142-23775180)
chr7 (310-343)||(15093539-15093572)
chr7 (308-353)||(17358254-17358299)
chr7 (310-347)||(38652037-38652074)
chr7 (308-353)||(47532774-47532819)
chr7 (308-344)||(31298798-31298834)
chr7 (309-345)||(41745340-41745376)
[»] scaffold0014 (1 HSPs)
scaffold0014 (312-346)||(165348-165382)
[»] scaffold0036 (1 HSPs)
scaffold0036 (310-343)||(90719-90752)


Alignment Details
Target: scaffold0023 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 125565 - 125610
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaataaatat 353  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||    
T  125565 gacatatattacaggggtgaaaaacactattaacccaaataaatat 125610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 26404915 - 26404867
Alignment:
Q  309 acatatattataagggtgaaaaacactattaacccaaataaatataaga 357  Q
    |||||||||| |||||||||||||||||||||| |||| ||||||||||    
T  26404915 acatatattacaagggtgaaaaacactattaactcaaaaaaatataaga 26404867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 10542076 - 10542041
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10542076 gacatatattacaagggtgaaaaacactattaaccc 10542041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Original strand, 10691043 - 10691078
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10691043 gacatatattacaagggtgaaaaacactattaaccc 10691078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 13952493 - 13952458
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  13952493 gacatatattacaagggtgaaaaacactattaaccc 13952458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 351
Target Start/End: Complemental strand, 16867795 - 16867752
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaataaat 351  Q
    ||||||||||| | ||||||||||||||||||||||||| ||||    
T  16867795 gacatatattacaggggtgaaaaacactattaacccaaaaaaat 16867752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 21000389 - 21000354
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  21000389 gacatatattacaagggtgaaaaacactattaaccc 21000354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 22634152 - 22634117
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22634152 gacatatattacaagggtgaaaaacactattaaccc 22634117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Original strand, 22634367 - 22634402
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22634367 gacatatattacaagggtgaaaaacactattaaccc 22634402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 38941481 - 38941446
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||||| ||||||||||||||||||||||    
T  38941481 gacatatattataggggtgaaaaacactattaaccc 38941446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 342
Target Start/End: Original strand, 23294756 - 23294790
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacc 342  Q
    ||||||||||| |||||||||||||||||||||||    
T  23294756 gacatatattacaagggtgaaaaacactattaacc 23294790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 26006548 - 26006510
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  26006548 gacatatattacaggggtgaaaaacactattaacccaaa 26006510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 26524643 - 26524681
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  26524643 gacatatattacaggggtgaaaaacactattaacccaaa 26524681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 29989715 - 29989752
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaa 345  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  29989715 gacatatattacaggggtgaaaaacactattaacccaa 29989752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 345
Target Start/End: Complemental strand, 6802110 - 6802074
Alignment:
Q  309 acatatattataagggtgaaaaacactattaacccaa 345  Q
    |||||||||| | ||||||||||||||||||||||||    
T  6802110 acatatattacaggggtgaaaaacactattaacccaa 6802074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 14946657 - 14946689
Alignment:
Q  311 atatattataagggtgaaaaacactattaaccc 343  Q
    |||||||| ||||||||||||||||||||||||    
T  14946657 atatattacaagggtgaaaaacactattaaccc 14946689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 40616447 - 40616479
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaa 340  Q
    ||||||||||||| |||||||||||||||||||    
T  40616447 gacatatattataggggtgaaaaacactattaa 40616479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 5154756 - 5154712
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaataaata 352  Q
    ||||||||||| | |||||||||||||||||||||||||||||||    
T  5154756 gacatatattacaggggtgaaaaacactattaacccaaataaata 5154712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 39937051 - 39937012
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaat 347  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  39937051 gacatatattacaagggtgaaaaacactattaacccaaat 39937012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 43674214 - 43674174
Alignment:
Q  310 catatattataagggtgaaaaacactattaacccaaataaa 350  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  43674214 catatattacaggggtgaaaaacactattaacccaaataaa 43674174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 51659090 - 51659055
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  51659090 gacatatattacaagggtgaaaaacactattaaccc 51659055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 7014978 - 7015016
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  7014978 gacatatattacaggggtgaaaaacactattaacccaaa 7015016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 32858407 - 32858445
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  32858407 gacatatattacaagggtgaaaagcactattaacccaaa 32858445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 7731305 - 7731268
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaa 345  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  7731305 gacatatattacaggggtgaaaaacactattaacccaa 7731268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 5047202 - 5047158
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaataaata 352  Q
    ||||||||||| ||||||||||| |||||||||||| || |||||    
T  5047202 gacatatattacaagggtgaaaatcactattaaccctaaaaaata 5047158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 16871424 - 16871456
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaa 340  Q
    ||||||||||| |||||||||||||||||||||    
T  16871424 gacatatattacaagggtgaaaaacactattaa 16871456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 23043125 - 23043161
Alignment:
Q  310 catatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||| | |||||||||||||||||||||||||    
T  23043125 catatattacaggggtgaaaaacactattaacccaaa 23043161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 25024956 - 25024920
Alignment:
Q  310 catatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||| | |||||||||||||||||||||||||    
T  25024956 catatattacaggggtgaaaaacactattaacccaaa 25024920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 37585671 - 37585635
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccca 344  Q
    ||||||||||| | |||||||||||||||||||||||    
T  37585671 gacatatattacaggggtgaaaaacactattaaccca 37585635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 351
Target Start/End: Complemental strand, 47105 - 47062
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaataaat 351  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||    
T  47105 gacatatattacaagggtgaaaaacactattaacccaaaaaaat 47062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 47324 - 47361
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaa 345  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  47324 gacatatattacaagggtgaaaaacactattaacccaa 47361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 343
Target Start/End: Original strand, 16985440 - 16985475
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||||||||||||||||||||||||||||    
T  16985440 gacatatattataagggtgaaaaacactattaaccc 16985475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Original strand, 6954130 - 6954165
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||||| ||||||||||||||||||||||    
T  6954130 gacatatattataggggtgaaaaacactattaaccc 6954165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 345
Target Start/End: Complemental strand, 26712043 - 26712008
Alignment:
Q  310 catatattataagggtgaaaaacactattaacccaa 345  Q
    ||||||||| ||||||||||||||||||||||||||    
T  26712043 catatattacaagggtgaaaaacactattaacccaa 26712008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 351
Target Start/End: Complemental strand, 29525658 - 29525615
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaataaat 351  Q
    ||||||||||| | |||||||||||| |||||||||||||||||    
T  29525658 gacatatattacaggggtgaaaaacaatattaacccaaataaat 29525615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 43703045 - 43703010
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||||| ||||||||||||||||||||||    
T  43703045 gacatatattataggggtgaaaaacactattaaccc 43703010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 15734509 - 15734471
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  15734509 gacatatattacaggggtgaaaaacactattaacccaaa 15734471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 48759699 - 48759733
Alignment:
Q  312 tatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||| |||||||||||||||||||||||||||    
T  48759699 tatattacaagggtgaaaaacactattaacccaaa 48759733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 51237997 - 51237959
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  51237997 gacatatattacaggggtgaaaaacactattaacccaaa 51237959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 9403355 - 9403322
Alignment:
Q  310 catatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||| ||||||||||||||||||||||||    
T  9403355 catatattacaagggtgaaaaacactattaaccc 9403322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 15734814 - 15734851
Alignment:
Q  311 atatattataagggtgaaaaacactattaacccaaata 348  Q
    |||||||| | |||||||||||||||||||||||||||    
T  15734814 atatattaaaggggtgaaaaacactattaacccaaata 15734851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 49613784 - 49613821
Alignment:
Q  309 acatatattataagggtgaaaaacactattaacccaaa 346  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  49613784 acatgtattataggggtgaaaaacactattaacccaaa 49613821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 5613750 - 5613714
Alignment:
Q  312 tatattataagggtgaaaaacactattaacccaaata 348  Q
    ||||||| | |||||||||||||||||||||||||||    
T  5613750 tatattacaggggtgaaaaacactattaacccaaata 5613714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 17697189 - 17697151
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  17697189 gacatatattacaagggtgaaaaacactattaacccaaa 17697151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 3238450 - 3238413
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaa 345  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  3238450 gacatatattacaagggtgaaaaacactattaacccaa 3238413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 19495446 - 19495409
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaa 345  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  19495446 gacatatattacaagggtgaaaaacactattaacccaa 19495409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 4758486 - 4758451
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||||| ||||||||||||||||||||||    
T  4758486 gacatatattataggggtgaaaaacactattaaccc 4758451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 343
Target Start/End: Original strand, 6788143 - 6788174
Alignment:
Q  312 tatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||||||||||||||||||||||||    
T  6788143 tatattataagggtgaaaaacactattaaccc 6788174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 10264433 - 10264398
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10264433 gacatatattacaagggtgaaaaacactattaaccc 10264398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Original strand, 15323680 - 15323715
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  15323680 gacatatattacaagggtgaaaaacactattaaccc 15323715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 20569934 - 20569899
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  20569934 gacatatattacaagggtgaaaaacactattaaccc 20569899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Original strand, 40269804 - 40269839
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  40269804 gacatatattacaagggtgaaaaacactattaaccc 40269839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 342
Target Start/End: Original strand, 23573388 - 23573422
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacc 342  Q
    ||||||||||| |||||||||||||||||||||||    
T  23573388 gacatatattacaagggtgaaaaacactattaacc 23573422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 343
Target Start/End: Complemental strand, 49236360 - 49236326
Alignment:
Q  309 acatatattataagggtgaaaaacactattaaccc 343  Q
    |||||||||||| ||||||||||||||||||||||    
T  49236360 acatatattataggggtgaaaaacactattaaccc 49236326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 19291596 - 19291633
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaa 345  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  19291596 gacatatattataggggtgaaaagcactattaacccaa 19291633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 54553105 - 54553072
Alignment:
Q  322 gggtgaaaaacactattaacccaaataaatataa 355  Q
    ||||||||||||||||||||||||| ||||||||    
T  54553105 gggtgaaaaacactattaacccaaaaaaatataa 54553072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 20513704 - 20513666
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  20513704 gacatatattataggggtgaaaaacactattaacccaaa 20513666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 40452173 - 40452215
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaataaa 350  Q
    ||||||||||||| |||||||||||||||||||||| ||||||    
T  40452173 gacatatattataggggtgaaaaacactattaaccctaataaa 40452215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 7511382 - 7511341
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaataa 349  Q
    ||||||||||||| |||||||||||||||||||||| |||||    
T  7511382 gacatatattataggggtgaaaaacactattaaccctaataa 7511341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 28192332 - 28192295
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaa 345  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  28192332 gacatatattataagggtgaaaaacactactaacccaa 28192295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 39257189 - 39257154
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  39257189 gacatatattacaagggtgaaaaacactattaaccc 39257154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 24388854 - 24388892
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  24388854 gacatatattacaggggtgaaaaacactattaacccaaa 24388892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 25890582 - 25890544
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  25890582 gacatatattataggggtaaaaaacactattaacccaaa 25890544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 33010833 - 33010795
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  33010833 gacatatattacaggggtgaaaaacactattaacccaaa 33010795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Complemental strand, 34828935 - 34828901
Alignment:
Q  312 tatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||| |||||||||||||||||||||||||||    
T  34828935 tatattacaagggtgaaaaacactattaacccaaa 34828901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 6748971 - 6749008
Alignment:
Q  309 acatatattataagggtgaaaaacactattaacccaaa 346  Q
    |||||||||| | |||||||||||||||||||||||||    
T  6748971 acatatattacaggggtgaaaaacactattaacccaaa 6749008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 12883335 - 12883372
Alignment:
Q  311 atatattataagggtgaaaaacactattaacccaaata 348  Q
    |||||||| | |||||||||||||||||||||||||||    
T  12883335 atatattaaaggggtgaaaaacactattaacccaaata 12883372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 20025572 - 20025605
Alignment:
Q  310 catatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||| ||||||||||||||||||||||||    
T  20025572 catatattacaagggtgaaaaacactattaaccc 20025605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 22265170 - 22265133
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaa 345  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  22265170 gacatatattacaggggtgaaaaacactattaacccaa 22265133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 39164981 - 39165014
Alignment:
Q  310 catatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||||||||||||| ||||||||||||    
T  39164981 catatattataagggtgaaaagcactattaaccc 39165014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 40926929 - 40926962
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaac 341  Q
    ||||||||||| ||||||||||||||||||||||    
T  40926929 gacatatattacaagggtgaaaaacactattaac 40926962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 5513518 - 5513482
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccca 344  Q
    ||||||||||| | |||||||||||||||||||||||    
T  5513518 gacatatattacaggggtgaaaaacactattaaccca 5513482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 20101009 - 20101053
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaataaata 352  Q
    ||||||||||| | |||||||||||||||||||||| || |||||    
T  20101009 gacatatattacaggggtgaaaaacactattaacccgaaaaaata 20101053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 33216640 - 33216676
Alignment:
Q  310 catatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||| | |||||||||||||||||||||||||    
T  33216640 catatattacaggggtgaaaaacactattaacccaaa 33216676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 344
Target Start/End: Original strand, 34963603 - 34963639
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccca 344  Q
    ||||||||||| | |||||||||||||||||||||||    
T  34963603 gacatatattacaggggtgaaaaacactattaaccca 34963639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 356
Target Start/End: Complemental strand, 39163854 - 39163810
Alignment:
Q  312 tatattataagggtgaaaaacactattaacccaaataaatataag 356  Q
    ||||||| | |||||||||||||||||||||| ||||||| ||||    
T  39163854 tatattacaggggtgaaaaacactattaaccctaataaatttaag 39163810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 20222561 - 20222594
Alignment:
Q  310 catatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||||||||||||||||||||||||||    
T  20222561 catatattataagggtgaaaaacactattaaccc 20222594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 22116545 - 22116578
Alignment:
Q  310 catatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||||||||||||||||||||||||||    
T  22116545 catatattataagggtgaaaaacactattaaccc 22116578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 2255398 - 2255363
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  2255398 gacatatattacaagggtgaaaaacactattaaccc 2255363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 18699034 - 18698999
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18699034 gacatatattacaagggtgaaaaacactattaaccc 18698999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 25948665 - 25948630
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  25948665 gacatatattacaagggtgaaaaacactattaaccc 25948630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Original strand, 32276336 - 32276371
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  32276336 gacatatattacaagggtgaaaaacactattaaccc 32276371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 9964388 - 9964350
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  9964388 gacatatattacaggggtgaaaaacactattaacccaaa 9964350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 15502562 - 15502524
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  15502562 gacatatattacaggggtgaaaaacactattaacccaaa 15502524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 28632017 - 28632055
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  28632017 gacatatattacaggggtgaaaaacactattaacccaaa 28632055  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 30240816 - 30240850
Alignment:
Q  309 acatatattataagggtgaaaaacactattaaccc 343  Q
    |||||||||| ||||||||||||||||||||||||    
T  30240816 acatatattacaagggtgaaaaacactattaaccc 30240850  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 9865282 - 9865319
Alignment:
Q  311 atatattataagggtgaaaaacactattaacccaaata 348  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  9865282 atatattataggggtgaaaaacactattaaccctaata 9865319  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 4212704 - 4212740
Alignment:
Q  312 tatattataagggtgaaaaacactattaacccaaata 348  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  4212704 tatattacaagggtgaaaaacactattaaccctaata 4212740  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 4407903 - 4407867
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccca 344  Q
    ||||||||||| | |||||||||||||||||||||||    
T  4407903 gacatatattacaggggtgaaaaacactattaaccca 4407867  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 27660627 - 27660663
Alignment:
Q  310 catatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||| | |||||||||||||||||||||||||    
T  27660627 catatattacaggggtgaaaaacactattaacccaaa 27660663  T

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Target: scaffold0035 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Original strand, 72429 - 72464
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  72429 gacatatattacaagggtgaaaaacactattaaccc 72464  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 15113910 - 15113875
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  15113910 gacatatattacaagggtgaaaaacactattaaccc 15113875  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 342
Target Start/End: Complemental strand, 6162981 - 6162947
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacc 342  Q
    ||||||||||| |||||||||||||||||||||||    
T  6162981 gacatatattacaagggtgaaaaacactattaacc 6162947  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 22981059 - 22981097
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  22981059 gacatatattacaggggtgaaaaacactattaacccaaa 22981097  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 33330890 - 33330853
Alignment:
Q  312 tatattataagggtgaaaaacactattaacccaaataa 349  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  33330890 tatattacaggggtgaaaaacactattaacccaaataa 33330853  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 40628424 - 40628461
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaa 345  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  40628424 gacatatattacaggggtgaaaaacactattaacccaa 40628461  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 345
Target Start/End: Complemental strand, 43897736 - 43897703
Alignment:
Q  312 tatattataagggtgaaaaacactattaacccaa 345  Q
    ||||||| ||||||||||||||||||||||||||    
T  43897736 tatattacaagggtgaaaaacactattaacccaa 43897703  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 43898813 - 43898845
Alignment:
Q  312 tatattataagggtgaaaaacactattaaccca 344  Q
    ||||||| |||||||||||||||||||||||||    
T  43898813 tatattacaagggtgaaaaacactattaaccca 43898845  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 4098132 - 4098093
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaat 347  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  4098132 gacatatattacaggggtgaaaaacactattaacccaaat 4098093  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 7881451 - 7881416
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  7881451 gacatatattacaagggtgaaaaacactattaaccc 7881416  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 343
Target Start/End: Original strand, 13593469 - 13593500
Alignment:
Q  312 tatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||||||||||||||||||||||||    
T  13593469 tatattataagggtgaaaaacactattaaccc 13593500  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 17358039 - 17358004
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||||    
T  17358039 gacatatattacaagggtgaaaaacactattaaccc 17358004  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 23775142 - 23775180
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  23775142 gacatatattacaggggtgaaaaacactattaacccaaa 23775180  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 15093572 - 15093539
Alignment:
Q  310 catatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||| ||||||||||||||||||||||||    
T  15093572 catatattacaagggtgaaaaacactattaaccc 15093539  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 17358254 - 17358299
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaataaatat 353  Q
    ||||||||||| | |||||||||||||||||||||| | |||||||    
T  17358254 gacatatattacaggggtgaaaaacactattaaccctattaaatat 17358299  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 38652037 - 38652074
Alignment:
Q  310 catatattataagggtgaaaaacactattaacccaaat 347  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  38652037 catatattaaaggggtgaaaaacactattaacccaaat 38652074  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 47532819 - 47532774
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaacccaaataaatat 353  Q
    ||||||||||| | ||||||||| ||||||||||||||| ||||||    
T  47532819 gacatatattacaggggtgaaaagcactattaacccaaaaaaatat 47532774  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 344
Target Start/End: Original strand, 31298798 - 31298834
Alignment:
Q  308 gacatatattataagggtgaaaaacactattaaccca 344  Q
    ||||||||||| | |||||||||||||||||||||||    
T  31298798 gacatatattacaggggtgaaaaacactattaaccca 31298834  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 41745340 - 41745376
Alignment:
Q  309 acatatattataagggtgaaaaacactattaacccaa 345  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  41745340 acatatattacaagggtgaaaagcactattaacccaa 41745376  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Complemental strand, 165382 - 165348
Alignment:
Q  312 tatattataagggtgaaaaacactattaacccaaa 346  Q
    ||||||| |||||||||||||||||||||||||||    
T  165382 tatattacaagggtgaaaaacactattaacccaaa 165348  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 90752 - 90719
Alignment:
Q  310 catatattataagggtgaaaaacactattaaccc 343  Q
    ||||||||||| ||||||||||||||||||||||    
T  90752 catatattataggggtgaaaaacactattaaccc 90719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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