View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19073_high_20 (Length: 349)
Name: NF19073_high_20
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19073_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 5 - 335
Target Start/End: Complemental strand, 2653802 - 2653479
Alignment:
| Q |
5 |
gaggagcagagaaaaatgtctaatattcacaagggaattcatcgaccctctatgctgaacccgcctttttcacctattgggcgagtatgaagtgtcgtct |
104 |
Q |
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| T |
2653802 |
gaggagaagagaaaaatgtctaatattcacaagggaattcatcgaccctctatgctgaaccagcctttttcgcctattgggcgagtatgaagtgtcttct |
2653703 |
T |
|
| Q |
105 |
cacacttgaattccaacacagcctgattgaagaccacaactcgagcgaaaatatctattgccagctatgagtccatattgtatgcaattgttagtaggaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2653702 |
cacacttgaattccaacacagcctgattgaagaccacaactcgagcgaaaatatctattgccagctatgagtccatattgtatgcaattgttagta---- |
2653607 |
T |
|
| Q |
205 |
gtaggaactgaaattttgtaagaagtgaacatggtaaggatgagattcacatcaatatatgtaggaggtgctctagttctgccttatttgaacagagact |
304 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2653606 |
---ggaactgaaattttgtaagaagtgaacatggtgaggatgagattcacatcaatatatgtaggaggtgctctagttctgccttatttgaacagagact |
2653510 |
T |
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| Q |
305 |
gggttattactcatcatgtcaatataataag |
335 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2653509 |
gggttattactcatcatgtcaatataataag |
2653479 |
T |
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