View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19073_high_22 (Length: 317)

Name: NF19073_high_22
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19073_high_22
NF19073_high_22
[»] chr8 (3 HSPs)
chr8 (10-317)||(6144882-6145189)
chr8 (92-219)||(14317852-14317979)
chr8 (92-219)||(26986226-26986353)
[»] chr4 (2 HSPs)
chr4 (88-287)||(3423476-3423676)
chr4 (92-219)||(35091755-35091882)
[»] chr6 (4 HSPs)
chr6 (88-287)||(21938392-21938591)
chr6 (92-219)||(21276613-21276740)
chr6 (89-229)||(12910112-12910248)
chr6 (89-229)||(12935775-12935911)
[»] chr3 (7 HSPs)
chr3 (92-219)||(5480725-5480852)
chr3 (92-219)||(4050648-4050775)
chr3 (92-219)||(6857292-6857419)
chr3 (92-219)||(8459152-8459279)
chr3 (92-219)||(10590532-10590659)
chr3 (92-219)||(10677288-10677415)
chr3 (92-219)||(31080744-31080871)
[»] chr7 (6 HSPs)
chr7 (92-219)||(12852516-12852643)
chr7 (92-219)||(14611158-14611285)
chr7 (92-219)||(26051861-26051988)
chr7 (92-219)||(26061220-26061347)
chr7 (88-211)||(20461927-20462050)
chr7 (145-207)||(20484663-20484725)
[»] chr5 (4 HSPs)
chr5 (92-219)||(9876777-9876904)
chr5 (92-219)||(39904685-39904812)
chr5 (88-174)||(9852139-9852225)
chr5 (88-178)||(43540044-43540133)
[»] chr1 (3 HSPs)
chr1 (92-219)||(28575137-28575264)
chr1 (95-287)||(49060514-49060706)
chr1 (91-287)||(49055415-49055611)
[»] chr2 (1 HSPs)
chr2 (91-196)||(8366499-8366604)
[»] scaffold0007 (1 HSPs)
scaffold0007 (100-196)||(216966-217062)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 317
Target Start/End: Original strand, 6144882 - 6145189
Alignment:
Q  10 aatatatgttatatgttcattaaaaggaaaatatcctactatttttcttgttatggtcaaaatatttttaccgcagcgccccttgggatgtatctatcat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |||||||||||||||||||||||||    
T  6144882 aatatatgttatatgttcattaaaaggaaaatatcctactatttttctttttatggtcaaagtatttttacccctgcgccccttgggatgtatctatcat 6144981  T
Q  110 caagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttccaccattaattatcaattaa 209  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  6144982 caagtatttcaaccacataaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttccaccattgatcatcaattaa 6145081  T
Q  210 atatgggcttataccacatcaattataatattttcaatgtgttcaacaagatattcgaagacatcgtatcattgtcaaacaaataattgcaagatttggt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  6145082 atatgggcttataccacatcaattataatattttcaatgtgttcaacaagatattcgaagacatcatatcattgtcaaacaaattattgcaagatttggt 6145181  T
Q  310 attatttt 317  Q
    ||||||||    
T  6145182 attatttt 6145189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 14317979 - 14317852
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    |||||||||||||||  ||||||| | |||  || | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  14317979 ttgggatgtatctattgtcaagtactacaattactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 14317880  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||| ||||||||||    
T  14317879 ctattggtaatcaattagatatgggctt 14317852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 26986353 - 26986226
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    |||||||||||||||  ||||||| | |||  || | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  26986353 ttgggatgtatctattgtcaagtactacaattactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 26986254  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||| ||||||||||    
T  26986253 ctattggtaatcaattagatatgggctt 26986226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 88 - 287
Target Start/End: Complemental strand, 3423676 - 3423476
Alignment:
Q  88 ccccttgggatgt-atctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagt 186  Q
    ||||||||||||| ||| ||||||||||| ||||| ||| | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| |||||||    
T  3423676 ccccttgggatgttatcgatcatcaagtacttcaatcactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagt 3423577  T
Q  187 ttccaccattaattatcaattaaatatgggcttataccacatcaattataatattttcaatgtgttcaacaagatattcgaagacatcgtatcattgtca 286  Q
    |||||||||| || ||||| || || ||||||| |||||||||  | || || | ||||||||||||||||  || | | |||||||| |||| ||||||    
T  3423576 ttccaccattgatgatcaaatagatttgggcttgtaccacatccctaatgatgtcttcaatgtgttcaacatcatttccaaagacatcatatccttgtca 3423477  T
Q  287 a 287  Q
    |    
T  3423476 a 3423476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 35091755 - 35091882
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    |||||||||||||||  ||||||| | |||  || | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  35091755 ttgggatgtatctattgtcaagtactacaattactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 35091854  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||| ||||||||||    
T  35091855 ctattggtaatcaattagatatgggctt 35091882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 88 - 287
Target Start/End: Original strand, 21938392 - 21938591
Alignment:
Q  88 ccccttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtt 187  Q
    |||||||||||||||||||  ||||||| ||||| |||   ||||||||| |||||||||| |||| ||||||||||||||||||||||||  |||||||    
T  21938392 ccccttgggatgtatctattgtcaagtacttcaatcactttaatagtgtactttcatcattgaacccaagacttgatgctactcaagtgtggattgagtt 21938491  T
Q  188 tccaccattaattatcaattaaatatgggcttataccacatcaattataatattttcaatgtgttcaacaagatattcgaagacatcgtatcattgtcaa 287  Q
    |||||||||  | |||||||| || |||| || |||||||||  | |||||   |||||||| |||||||  || ||| |||||||| ||||||||||||    
T  21938492 tccaccattggtgatcaattagatttgggtttgtaccacatccctaataatgccttcaatgtattcaacatcattttcaaagacatcatatcattgtcaa 21938591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 21276613 - 21276740
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    |||||||||||||||  ||||||| | |||  || | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  21276613 ttgggatgtatctattgtcaagtactacaattactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 21276712  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||| ||||||||||    
T  21276713 ctattggtaatcaattagatatgggctt 21276740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 229
Target Start/End: Original strand, 12910112 - 12910248
Alignment:
Q  89 cccttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagttt 188  Q
    ||||||||||| ||||||  ||||||| ||||| ||| | |||||| ||  |||| ||||  ||| ||||||||||| |||||||||    |||||||||    
T  12910112 cccttgggatgcatctattgtcaagtacttcaatcactctaatagtataccttcaccattgcacccaagacttgatgttactcaagt----gttgagttt 12910207  T
Q  189 ccaccattaattatcaattaaatatgggcttataccacatc 229  Q
    ||||||||  | |||||||| || |||||||||||| ||||    
T  12910208 ccaccattggtgatcaattagatttgggcttataccgcatc 12910248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 229
Target Start/End: Original strand, 12935775 - 12935911
Alignment:
Q  89 cccttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagttt 188  Q
    |||||| |||| ||||||  ||||||| ||||| ||| | |||||| ||  |||| |||| |||| ||||||||||| |||||||||    |||||||||    
T  12935775 cccttgagatgcatctattgtcaagtacttcaatcactctaatagtataccttcaccattgaacccaagacttgatgttactcaagt----gttgagttt 12935870  T
Q  189 ccaccattaattatcaattaaatatgggcttataccacatc 229  Q
    ||||||||  | |||||||| || |||||||||||| ||||    
T  12935871 ccaccattggtgatcaattagatttgggcttataccgcatc 12935911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 5480852 - 5480725
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    |||||||||||||||  ||||||| | |||  || | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  5480852 ttgggatgtatctattgtcaagtactacaattactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 5480753  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||||||||||||||    
T  5480752 ctattggtaatcaattaaatatgggctt 5480725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 4050648 - 4050775
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    |||||||||||||||  ||||||| | |||  || | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  4050648 ttgggatgtatctattgtcaagtactacaattactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 4050747  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||| ||||||||||    
T  4050748 ctattggtaatcaattagatatgggctt 4050775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 6857419 - 6857292
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    |||||||||||||||  ||||||| | |||  || | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  6857419 ttgggatgtatctattgtcaagtactacaattactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 6857320  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||| ||||||||||    
T  6857319 ctattggtaatcaattagatatgggctt 6857292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 8459152 - 8459279
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    |||||||||||||||  ||||||| | |||  || | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  8459152 ttgggatgtatctattgtcaagtactacaattactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 8459251  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||| ||||||||||    
T  8459252 ctattggtaatcaattagatatgggctt 8459279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 10590659 - 10590532
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    |||||||||||||||  ||||||| | |||  || | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  10590659 ttgggatgtatctattgtcaagtactacaattactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 10590560  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||| ||||||||||    
T  10590559 ctattggtaatcaattagatatgggctt 10590532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 10677415 - 10677288
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    |||||||||||||||  ||||||| | |||  || | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  10677415 ttgggatgtatctattgtcaagtactacaattactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 10677316  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||| ||||||||||    
T  10677315 ctattggtaatcaattagatatgggctt 10677288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 31080871 - 31080744
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    |||||||||||||||  ||||||| | |||  || | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  31080871 ttgggatgtatctattgtcaagtactacaattactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 31080772  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||| ||||||||||    
T  31080771 ctattggtaatcaattagatatgggctt 31080744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 12852516 - 12852643
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    |||||||||||||||  ||||||| | |||  || | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  12852516 ttgggatgtatctattgtcaagtactacaattactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 12852615  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||| ||||||||||    
T  12852616 ctattggtaatcaattagatatgggctt 12852643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 14611158 - 14611285
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    |||||||||||||||  ||||||| | |||  || | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  14611158 ttgggatgtatctattgtcaagtactacaattactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 14611257  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||| ||||||||||    
T  14611258 ctattcgtaatcaattagatatgggctt 14611285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 26051861 - 26051988
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    |||||||||||||||  ||||||| | |||  || | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  26051861 ttgggatgtatctattgtcaagtactacaattactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 26051960  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||| ||||||||||    
T  26051961 ctattggtaatcaattagatatgggctt 26051988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 26061220 - 26061347
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    |||||||||||||||  ||||||| | |||  || | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  26061220 ttgggatgtatctattgtcaagtactacaattactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 26061319  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||| ||||||||||    
T  26061320 ctattggtaatcaattagatatgggctt 26061347  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 20462050 - 20461927
Alignment:
Q  88 ccccttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtt 187  Q
    ||||||| |||||||||||| ||||||| ||||| ||| | ||||||||| ||||  |||| ||| |||||  ||||||||||||||| ||   |||| |    
T  20462050 ccccttgagatgtatctatcgtcaagtacttcaatcactctaatagtgtactttctccattgaacataagatgtgatgctactcaagtatggactgagat 20461951  T
Q  188 tccaccattaattatcaattaaat 211  Q
    ||||||||| || |||||||||||    
T  20461950 tccaccattgatgatcaattaaat 20461927  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 20484725 - 20484663
Alignment:
Q  145 cattaaacctaagacttgatgctactcaagtgtgcgttgagtttccaccattaattatcaatt 207  Q
    |||| |||||||||| ||||||||||||||| || |||||| |||||||||| || |||||||    
T  20484725 cattgaacctaagacgtgatgctactcaagtatgggttgagattccaccattgatgatcaatt 20484663  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 9876904 - 9876777
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    |||||||||||||||  ||||||| | |||  || | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  9876904 ttgggatgtatctattgtcaagtactacaattactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 9876805  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||| ||||||||||    
T  9876804 ctattggtaatcaattagatatgggctt 9876777  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 39904685 - 39904812
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    ||||||| |||||||  ||||||| | |||  || | ||||||||  ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  39904685 ttgggatctatctattgtcaagtactacaattactctaatagtgtgctttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 39904784  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||| ||||||||||    
T  39904785 ctattggtaatcaattagatatgggctt 39904812  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 9852139 - 9852225
Alignment:
Q  88 ccccttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaag 174  Q
    |||||||||||||||||||| ||||||| ||||| ||| | ||||||||| ||||| |||| |||| |  |||||||||||||||||    
T  9852139 ccccttgggatgtatctatcgtcaagtacttcaatcactctaatagtgtactttcaccattgaacccagtacttgatgctactcaag 9852225  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 43540133 - 43540044
Alignment:
Q  88 ccccttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtg 178  Q
    ||||||||||||| |||||| ||||||| ||||| ||| | ||||||||| ||||| |||| |||| || |||||||| ||||||||||||    
T  43540133 ccccttgggatgt-tctatcgtcaagtacttcaatcactctaatagtgtactttcaccattgaacccaaaacttgatgttactcaagtgtg 43540044  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 28575137 - 28575264
Alignment:
Q  92 ttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcca 191  Q
    |||||||||||||||  ||||||| | |||  || | ||||||||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  28575137 ttgggatgtatctattgtcaagtactacaattactctaatagtgtactttcaccattgaacccaagacttgatgctactcaagtgtgggttgagtttcca 28575236  T
Q  192 ccattaattatcaattaaatatgggctt 219  Q
    | |||  | |||||||| ||||||||||    
T  28575237 ctattggtaatcaattagatatgggctt 28575264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 95 - 287
Target Start/End: Complemental strand, 49060706 - 49060514
Alignment:
Q  95 ggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttccacca 194  Q
    ||||||||||||  ||||||| ||||| ||  | ||||||||| ||| |||||| |||  |||| |||||| || ||||| ||| ||||| |||||||||    
T  49060706 ggatgtatctattgtcaagtacttcaatcattctaatagtgtactttaatcattgaactcaagatttgatgttattcaagggtgagttgattttccacca 49060607  T
Q  195 ttaattatcaattaaatatgggcttataccacatcaattataatattttcaatgtgttcaacaagatattcgaagacatcgtatcattgtcaa 287  Q
    || || ||||| || |||| ||||| |||||||||  | | ||| | ||||||||||||||||  || | |||||||||| |||| |||||||    
T  49060606 ttgatgatcaactagatattggcttgtaccacatccctgagaatgtcttcaatgtgttcaacattatttccgaagacatcatatccttgtcaa 49060514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 287
Target Start/End: Complemental strand, 49055611 - 49055415
Alignment:
Q  91 cttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcc 190  Q
    ||||||||||||||||  ||||||| ||||| ||  | ||||||||| ||| |||||| |||  |||| |||||| || ||||| ||| ||||| |||||    
T  49055611 cttgggatgtatctattgtcaagtacttcaatcattctaatagtgtactttaatcattgaactcaagaattgatgttattcaagggtgagttgattttcc 49055512  T
Q  191 accattaattatcaattaaatatgggcttataccacatcaattataatattttcaatgtgttcaacaagatattcgaagacatcgtatcattgtcaa 287  Q
     ||||| || ||||| || |||| ||||| |||||||||  | | ||| | |||||||| |||||||  || | | |||||||| |||| |||||||    
T  49055511 tccattgatgatcaactagatattggcttgtaccacatccctgacaatgtcttcaatgtattcaacattatttccaaagacatcatatccttgtcaa 49055415  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 8366604 - 8366499
Alignment:
Q  91 cttgggatgtatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttcc 190  Q
    ||||||||||||||||| |||  || ||||| |||   |||||| |||||||| |||| |||  |||| |||||||||||| |||||| |||||||||||    
T  8366604 cttgggatgtatctatcgtcagatacttcaaacactataatagtatattttcaccattgaactcaagatttgatgctactcgagtgtgggttgagtttcc 8366505  T
Q  191 accatt 196  Q
    ||||||    
T  8366504 accatt 8366499  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 217062 - 216966
Alignment:
Q  100 tatctatcatcaagtatttcaaccacacaaatagtgtattttcatcattaaacctaagacttgatgctactcaagtgtgcgttgagtttccaccatt 196  Q
    |||||||| ||||||| ||||| ||  | |||||| || |||||   || |||| ||||||||||| |||||||| ||| |||||||||||||||||    
T  217062 tatctatcttcaagtacttcaatcaatctaatagtttactttcactgttgaacccaagacttgatgatactcaagcgtgggttgagtttccaccatt 216966  T

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