View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19073_high_27 (Length: 273)

Name: NF19073_high_27
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19073_high_27
NF19073_high_27
[»] chr4 (7 HSPs)
chr4 (1-256)||(52828991-52829246)
chr4 (191-246)||(1442243-1442298)
chr4 (191-246)||(37483090-37483145)
chr4 (188-246)||(42288823-42288880)
chr4 (191-239)||(25602921-25602969)
chr4 (190-246)||(47484280-47484335)
chr4 (209-249)||(50214184-50214224)
[»] chr7 (3 HSPs)
chr7 (190-249)||(27667206-27667265)
chr7 (191-253)||(20224879-20224941)
chr7 (189-245)||(35868348-35868404)
[»] chr3 (1 HSPs)
chr3 (188-249)||(35282871-35282932)
[»] chr2 (1 HSPs)
chr2 (191-246)||(22151719-22151774)
[»] chr6 (1 HSPs)
chr6 (191-246)||(8424693-8424748)
[»] chr8 (1 HSPs)
chr8 (192-253)||(7201014-7201075)
[»] chr1 (1 HSPs)
chr1 (190-231)||(50917161-50917202)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 52828991 - 52829246
Alignment:
Q  1 ttcttagtttccttatagactactccagcaatgcatttctaacagtaaatagatgcaaatagttgcaaataaggttcattgannnnnnnncaattaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        ||||||||||    
T  52828991 ttcttagtttccttatagactactccagcaatgcatttctaacagtaaatagatgcaaatagttgcaaaaaaggttcattgattttttttcaattaaata 52829090  T
Q  101 aaatcagatgacattatgcaagaaaacataaaaagtagacagactacgaacccaacagaaataatggatgttaagttaatatgattactatgatagggac 200  Q
    |||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  52829091 aaatcaaatgacattatgcaagaaaagatagaaagtagacagactacaaacccaacagaaatattggatgttaagttaatacgattactatgatagggac 52829190  T
Q  201 ttgagtattatagggtgcctaagccccacatcgagtagtatgggatacttggttaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52829191 ttgagtattatagggtgcctaagccccacatcgagtagtatgggatacttggttaa 52829246  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 1442298 - 1442243
Alignment:
Q  191 tgatagggacttgagtattatagggtgcctaagccccacatcgagtagtatgggat 246  Q
    ||||||||||||| ||| ||| ||||||| |||  |||||||||||||||||||||    
T  1442298 tgatagggacttgggtagtatggggtgcccaagtaccacatcgagtagtatgggat 1442243  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 37483090 - 37483145
Alignment:
Q  191 tgatagggacttgagtattatagggtgcctaagccccacatcgagtagtatgggat 246  Q
    ||||||||||||| ||||||| ||||||| |||  ||||||| |||||||||||||    
T  37483090 tgatagggacttgggtattatggggtgcccaagttccacatcaagtagtatgggat 37483145  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 42288880 - 42288823
Alignment:
Q  188 ctatgatagggacttgagtattatagggtgcctaagccccacatcgagtagtatgggat 246  Q
    ||||| |||||||||||||||||| ||||||||||| | |||||| ||||||| |||||    
T  42288880 ctatggtagggacttgagtattat-gggtgcctaagtctcacatcaagtagtacgggat 42288823  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 25602921 - 25602969
Alignment:
Q  191 tgatagggacttgagtattatagggtgcctaagccccacatcgagtagt 239  Q
    ||||||||| ||| ||||||| ||||||| ||| |||||||||||||||    
T  25602921 tgatagggatttgggtattatggggtgcccaagtcccacatcgagtagt 25602969  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 47484335 - 47484280
Alignment:
Q  190 atgatagggacttgagtattatagggtgcctaagccccacatcgagtagtatgggat 246  Q
    |||||||||||||| ||||||| ||||||| ||| |||||| |||||||| ||||||    
T  47484335 atgatagggacttgggtattatggggtgcc-aagtcccacaacgagtagtgtgggat 47484280  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 50214224 - 50214184
Alignment:
Q  209 tatagggtgcctaagccccacatcgagtagtatgggatact 249  Q
    ||||||||||| ||| |||||||||||||| ||||||||||    
T  50214224 tatagggtgcccaagtcccacatcgagtagaatgggatact 50214184  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 27667265 - 27667206
Alignment:
Q  190 atgatagggacttgagtattatagggtgcctaagccccacatcgagtagtatgggatact 249  Q
    |||||||||||||| ||||||| ||||| ||||| |||||||||||||||||| ||||||    
T  27667265 atgatagggacttgggtattatggggtggctaagtcccacatcgagtagtatgagatact 27667206  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 20224879 - 20224941
Alignment:
Q  191 tgatagggacttgagtattatagggtgcctaagccccacatcgagtagtatgggatacttggt 253  Q
    ||||||||||| | |||| |||||||||||||| ||||||| ||||||||||| |||||||||    
T  20224879 tgatagggactcgggtatcatagggtgcctaagtcccacattgagtagtatggaatacttggt 20224941  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 35868348 - 35868404
Alignment:
Q  189 tatgatagggacttgagtattatagggtgcctaagccccacatcgagtagtatggga 245  Q
    ||||||||||||||||||||| |  |||||| |||  ||||||||||||||||||||    
T  35868348 tatgatagggacttgagtattttgaggtgcccaagttccacatcgagtagtatggga 35868404  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 35282932 - 35282871
Alignment:
Q  188 ctatgatagggacttgagtattatagggtgcctaagccccacatcgagtagtatgggatact 249  Q
    |||||||||||||||| ||||||  || ||||||||||||||||  ||||||||||||||||    
T  35282932 ctatgatagggacttgggtattacgggttgcctaagccccacatgaagtagtatgggatact 35282871  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 22151774 - 22151719
Alignment:
Q  191 tgatagggacttgagtattatagggtgcctaagccccacatcgagtagtatgggat 246  Q
    ||||||| ||||| ||||||| ||||||||||| ||||||||||||| ||||||||    
T  22151774 tgataggaacttgggtattatggggtgcctaagtcccacatcgagtaatatgggat 22151719  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 8424693 - 8424748
Alignment:
Q  191 tgatagggacttgagtattatagggtgcctaagccccacatcgagtagtatgggat 246  Q
    ||||||||||||| ||||||| | |||| |||| |||||||| |||||||||||||    
T  8424693 tgatagggacttgggtattatggagtgcttaagtcccacatcaagtagtatgggat 8424748  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 7201075 - 7201014
Alignment:
Q  192 gatagggacttgagtattatagggtgcctaagccccacatcgagtagtatgggatacttggt 253  Q
    |||||||| ||||||||||||| ||||| ||| | ||||| |||||||||| ||| ||||||    
T  7201075 gatagggatttgagtattatagagtgcccaagtctcacattgagtagtatgagatgcttggt 7201014  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 50917161 - 50917202
Alignment:
Q  190 atgatagggacttgagtattatagggtgcctaagccccacat 231  Q
    |||||||||||||| ||||||| ||||||||||| |||||||    
T  50917161 atgatagggacttgggtattatggggtgcctaagtcccacat 50917202  T

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