View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19073_high_29 (Length: 255)

Name: NF19073_high_29
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19073_high_29
NF19073_high_29
[»] chr3 (4 HSPs)
chr3 (1-238)||(33328143-33328382)
chr3 (77-157)||(36326512-36326593)
chr3 (92-165)||(30912069-30912142)
chr3 (77-127)||(14029379-14029430)
[»] chr6 (6 HSPs)
chr6 (29-165)||(4834733-4834865)
chr6 (29-160)||(7415658-7415785)
chr6 (77-160)||(7422666-7422750)
chr6 (89-165)||(33242862-33242938)
chr6 (85-160)||(7426605-7426680)
chr6 (7-128)||(13886592-13886706)
[»] chr7 (3 HSPs)
chr7 (77-165)||(42513109-42513198)
chr7 (77-150)||(11206500-11206574)
chr7 (77-157)||(49017149-49017230)
[»] chr5 (3 HSPs)
chr5 (84-165)||(8123542-8123623)
chr5 (77-156)||(41709523-41709603)
chr5 (94-157)||(24108720-24108783)
[»] chr1 (2 HSPs)
chr1 (89-165)||(18583946-18584022)
chr1 (77-166)||(23405522-23405612)
[»] chr8 (3 HSPs)
chr8 (89-150)||(14276621-14276683)
chr8 (7-166)||(44761980-44762132)
chr8 (77-166)||(44765287-44765377)
[»] chr4 (2 HSPs)
chr4 (89-150)||(24733645-24733706)
chr4 (89-157)||(55322394-55322463)
[»] chr2 (1 HSPs)
chr2 (89-166)||(45327464-45327541)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 33328382 - 33328143
Alignment:
Q  1 gatctaaatgaaagaaccaaataatacgacgatccaatttgagtaggaatcccactccagaattgaatttatagaaagaaactaagaaaaaagaaaggaa 100  Q
    |||||||||||||| ||||| |||||| ||||||||||| ||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  33328382 gatctaaatgaaagcaccaactaatacaacgatccaattcgagtagggatcccacaccataattgaatttatagaaagaaactaagaaaaaagaaaggaa 33328283  T
Q  101 attgattatatctttcattgattctaattataaagcatacaatgcttatacagacttatgcatacatttgttcaatggctac--acaatagcaattagta 198  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  33328282 attgattatatctttcattggttctaattataaagcatacaatgcttatacagacttatgcatacatttgttcaatggctacgtacaatagcaattagta 33328183  T
Q  199 actaaccaatagaatatacctgatagatcccttctagaat 238  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33328182 actaaccaatagaatatacctgatagatcccttctagaat 33328143  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 36326593 - 36326512
Alignment:
Q  77 agaaacta-agaaaaaagaaaggaaattgattatatctttcattgattctaattataaagcatacaatgcttatacagactt 157  Q
    |||||||| |||||| |||||| ||||| ||||||| ||||||||||||| || ||||||||||||||||||||| ||||||    
T  36326593 agaaactagagaaaagagaaagaaaattcattatatttttcattgattctcataataaagcatacaatgcttatatagactt 36326512  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 30912142 - 30912069
Alignment:
Q  92 agaaaggaaattgattatatctttcattgattctaattataaagcatacaatgcttatacagacttatgcatac 165  Q
    |||||| ||||| ||||||| ||||||||||||| || |||| ||||||||| |||||| |||||| |||||||    
T  30912142 agaaagaaaattcattatatttttcattgattctcataataaggcatacaatacttatatagacttgtgcatac 30912069  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 14029430 - 14029379
Alignment:
Q  77 agaaacta-agaaaaaagaaaggaaattgattatatctttcattgattctaa 127  Q
    |||||||| ||| ||||||||||||||| ||||||| |||||||||||||||    
T  14029430 agaaactagagataaaagaaaggaaattcattatatttttcattgattctaa 14029379  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 165
Target Start/End: Complemental strand, 4834865 - 4834733
Alignment:
Q  29 acgatccaatttgagtaggaatcccactccagaattgaatttatagaaagaaacta-agaaaaaagaaaggaaattgattatatctttcattgattctaa 127  Q
    |||| |||||||||||||| ||| ||||||||||||     || ||  |||||||| |||||| |||||| ||||| ||||||| |||||||||||||||    
T  4834865 acgacccaatttgagtagggatcacactccagaatt-----tagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctaa 4834771  T
Q  128 ttataaagcatacaatgcttatacagacttatgcatac 165  Q
    | || | |||||||||||||||| ||||||||||||||    
T  4834770 taatgaggcatacaatgcttatatagacttatgcatac 4834733  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 7415785 - 7415658
Alignment:
Q  29 acgatccaatttgagtaggaatcccactccagaattgaatttatagaaagaaacta-agaaaaaagaaaggaaattgattatatctttcattgattctaa 127  Q
    ||||||||| ||||||||| ||| |||||||||| |     || ||| |||||||| |||||| |||||| ||||| ||||||| ||||||||||||| |    
T  7415785 acgatccaacttgagtagggatcacactccagaaat-----tagagagagaaactagagaaaagagaaagaaaattcattatatttttcattgattctca 7415691  T
Q  128 ttataaagcatacaatgcttatacagacttatg 160  Q
    | |||| |||||||||||||||| |||||||||    
T  7415690 taataaggcatacaatgcttatatagacttatg 7415658  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 7422750 - 7422666
Alignment:
Q  77 agaaacta-agaaaaaagaaaggaaattgattatatctttcattgattctaattataaagcatacaatgcttatacagacttatg 160  Q
    |||||||| |||||| |||||| ||||| ||||||| ||||||||||||| || |||| |||||||||||||||| |||||||||    
T  7422750 agaaactagagaaaagagaaagaaaattcattatatttttcattgattctcataataaggcatacaatgcttatatagacttatg 7422666  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 33242938 - 33242862
Alignment:
Q  89 aaaagaaaggaaattgattatatctttcattgattctaattataaagcatacaatgcttatacagacttatgcatac 165  Q
    |||||||| |||||| ||||||| ||||||||||||| || |||| |||||||||||||||| |||||| |||||||    
T  33242938 aaaagaaaagaaattcattatatttttcattgattctcataataaggcatacaatgcttatatagacttgtgcatac 33242862  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 7426680 - 7426605
Alignment:
Q  85 agaaaaaagaaaggaaattgattatatctttcattgattctaattataaagcatacaatgcttatacagacttatg 160  Q
    |||||| |||||| ||||| ||||||| ||||||||||||| || |||| |||||||||| ||||| |||||||||    
T  7426680 agaaaagagaaagaaaattcattatatttttcattgattctcataataaggcatacaatgtttatatagacttatg 7426605  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 128
Target Start/End: Complemental strand, 13886706 - 13886592
Alignment:
Q  7 aatgaaagaaccaaataatacgacgatccaatttgagtaggaatcccactccagaattgaatttatagaaagaaacta-agaaaaaagaaaggaaattga 105  Q
    |||||||| ||||||| |||||||   |||||||||||||| ||| ||||||||||||     || ||  |||||||| |||||| |||||| ||||| |    
T  13886706 aatgaaagcaccaaatgatacgac---ccaatttgagtagggatcacactccagaatt-----tagagggagaaactagagaaaagagaaagaaaattca 13886615  T
Q  106 ttatatctttcattgattctaat 128  Q
    |||||| ||||||||||||||||    
T  13886614 ttatatttttcattgattctaat 13886592  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 42513109 - 42513198
Alignment:
Q  77 agaaacta-agaaaaaagaaaggaaattgattatatctttcattgattctaattataaagcatacaatgcttatacagacttatgcatac 165  Q
    |||||||| |||||| |||||| ||||| ||||||| ||||||||||||| || ||||||||||||||||||||| |||||| |||||||    
T  42513109 agaaactagagaaaagagaaagaaaattcattatatttttcattgattctcataataaagcatacaatgcttatatagacttgtgcatac 42513198  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 11206574 - 11206500
Alignment:
Q  77 agaaacta-agaaaaaagaaaggaaattgattatatctttcattgattctaattataaagcatacaatgcttata 150  Q
    |||||||| |||||| |||||| ||||| ||||||| ||||||||||||| || |||| |||||||||| |||||    
T  11206574 agaaactagagaaaagagaaagaaaattcattatatttttcattgattctcataataaggcatacaatgtttata 11206500  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 49017230 - 49017149
Alignment:
Q  77 agaaacta-agaaaaaagaaaggaaattgattatatctttcattgattctaattataaagcatacaatgcttatacagactt 157  Q
    |||||||| ||| ||||||||| ||||  ||||||| ||||||| | ||| || |||| |||||||||||||||||| ||||    
T  49017230 agaaactagagataaaagaaagaaaatatattatatttttcattaagtctcataataaggcatacaatgcttatacaaactt 49017149  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 8123623 - 8123542
Alignment:
Q  84 aagaaaaaagaaaggaaattgattatatctttcattgattctaattataaagcatacaatgcttatacagacttatgcatac 165  Q
    ||||||| |||||| ||||| ||||||| ||||||||||||| || ||||||||||||||||||||| |||||| |||||||    
T  8123623 aagaaaagagaaagaaaattcattatatttttcattgattctcataataaagcatacaatgcttatatagacttgtgcatac 8123542  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 41709603 - 41709523
Alignment:
Q  77 agaaacta-agaaaaaagaaaggaaattgattatatctttcattgattctaattataaagcatacaatgcttatacagact 156  Q
    |||||||| |||||| |||||| ||||| ||||||| ||||||||||||| || |||| |||||||||| ||||| |||||    
T  41709603 agaaactatagaaaagagaaagaaaattcattatatttttcattgattctcataataaggcatacaatgtttatatagact 41709523  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 24108783 - 24108720
Alignment:
Q  94 aaaggaaattgattatatctttcattgattctaattataaagcatacaatgcttatacagactt 157  Q
    |||||||||| ||||||| |||||||| ||||||| ||||  ||||||||||||||| ||||||    
T  24108783 aaaggaaattcattatatttttcattggttctaatcataagacatacaatgcttatatagactt 24108720  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 18583946 - 18584022
Alignment:
Q  89 aaaagaaaggaaattgattatatctttcattgattctaattataaagcatacaatgcttatacagacttatgcatac 165  Q
    ||||||||||||||| | ||||| ||||||||||||| || ||||||||||||||||||||| |||||| |||||||    
T  18583946 aaaagaaaggaaattcagtatatttttcattgattctcataataaagcatacaatgcttatatagacttgtgcatac 18584022  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 23405522 - 23405612
Alignment:
Q  77 agaaacta-agaaaaaagaaaggaaattgattatatctttcattgattctaattataaagcatacaatgcttatacagacttatgcataca 166  Q
    |||||||| |||||| |||||| ||||| ||||||| ||||||||||||| || |||| |||||||||| ||| | |||||| ||||||||    
T  23405522 agaaactagagaaaagagaaagaaaattcattatatttttcattgattctcataataaggcatacaatgtttagatagacttgtgcataca 23405612  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 14276621 - 14276683
Alignment:
Q  89 aaaagaaaggaaattgattatatctttcattgattctaattataaagca-tacaatgcttata 150  Q
    ||||||||||||||||||||||| ||||||||||| |||| || ||||| |||||||||||||    
T  14276621 aaaagaaaggaaattgattatatttttcattgattttaatcatgaagcattacaatgcttata 14276683  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 44762132 - 44761980
Alignment:
Q  7 aatgaaagaaccaaataatacgacgatccaatttgagtaggaatcccactccagaattgaatttatagaaagaaacta-agaaaaaagaaaggaaattga 105  Q
    |||||||| ||||||| |||||||   |||||| ||||||| ||| ||||||||||||     || ||  |||||||| |||||| |||||  ||||| |    
T  44762132 aatgaaagcaccaaatgatacgac---ccaattcgagtagggatcacactccagaatt-----tagagggagaaactatagaaaagagaaaaaaaattca 44762041  T
Q  106 ttatatctttcattgattctaattataaagcatacaatgcttatacagacttatgcataca 166  Q
    |||||| ||||||||||| | || |||| |||||||||| ||||| |||||| ||||||||    
T  44762040 ttatatttttcattgattttcataataaggcatacaatgtttatatagacttgtgcataca 44761980  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 44765377 - 44765287
Alignment:
Q  77 agaaacta-agaaaaaagaaaggaaattgattatatctttcattgattctaattataaagcatacaatgcttatacagacttatgcataca 166  Q
    |||||||| |||||| |||||| ||||| ||||||| ||||||||||| | || |||| | |||||||| ||||| |||||| ||||||||    
T  44765377 agaaactatagaaaagagaaagaaaattcattatatttttcattgattttcataataaggaatacaatgtttatatagacttgtgcataca 44765287  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 24733706 - 24733645
Alignment:
Q  89 aaaagaaaggaaattgattatatctttcattgattctaattataaagcatacaatgcttata 150  Q
    ||||||||||||||| ||||||| |||||||  ||||||| || || |||||||||||||||    
T  24733706 aaaagaaaggaaattcattatatttttcattccttctaatcatgaaacatacaatgcttata 24733645  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 55322394 - 55322463
Alignment:
Q  89 aaaagaaaggaaattgattat-atctttcattgattctaattataaagcatacaatgcttatacagactt 157  Q
    ||||||||||||||| ||||| || ||||||| || ||||| || | |||||||||||||||| ||||||    
T  55322394 aaaagaaaggaaattcattattatttttcattcatcctaataatgaggcatacaatgcttatatagactt 55322463  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 45327464 - 45327541
Alignment:
Q  89 aaaagaaaggaaattgattatatctttcattgattctaattataaagcatacaatgcttatacagacttatgcataca 166  Q
    |||||||| |||||| ||||||| |||||||  |||| || ||||  ||||||||||||||| |||||| ||||||||    
T  45327464 aaaagaaaagaaatttattatatttttcattttttctcataataagacatacaatgcttatatagacttgtgcataca 45327541  T

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