View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19073_high_3 (Length: 655)

Name: NF19073_high_3
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19073_high_3
NF19073_high_3
[»] chr3 (30 HSPs)
chr3 (1-375)||(5885320-5885691)
chr3 (1-201)||(54946329-54946528)
chr3 (198-358)||(54946605-54946765)
chr3 (384-465)||(18427155-18427235)
chr3 (388-471)||(28529340-28529424)
chr3 (384-471)||(37776706-37776794)
chr3 (384-471)||(41451898-41451986)
chr3 (384-471)||(52123959-52124047)
chr3 (384-471)||(24734794-24734882)
chr3 (312-383)||(54949211-54949282)
chr3 (384-465)||(46450161-46450242)
chr3 (388-471)||(20493452-20493536)
chr3 (312-379)||(3744454-3744521)
chr3 (312-383)||(10179366-10179437)
chr3 (304-383)||(39822090-39822168)
chr3 (304-383)||(34209866-34209945)
chr3 (312-383)||(52349553-52349623)
chr3 (345-383)||(33519240-33519278)
chr3 (398-471)||(8824997-8825070)
chr3 (318-379)||(26215155-26215216)
chr3 (398-471)||(29388612-29388685)
chr3 (398-471)||(50156678-50156751)
chr3 (410-466)||(22604654-22604710)
chr3 (398-466)||(29588751-29588819)
chr3 (384-442)||(20791414-20791473)
chr3 (312-375)||(26297665-26297728)
chr3 (345-383)||(346603-346641)
chr3 (402-471)||(41387650-41387719)
chr3 (312-377)||(50516103-50516168)
chr3 (391-442)||(46161065-46161117)
[»] scaffold0713 (1 HSPs)
scaffold0713 (133-379)||(7364-7610)
[»] chr6 (24 HSPs)
chr6 (1-201)||(16856177-16856377)
chr6 (198-377)||(16855922-16856101)
chr6 (384-471)||(34905425-34905513)
chr6 (327-383)||(8643580-8643636)
chr6 (385-466)||(16187438-16187518)
chr6 (385-466)||(16187656-16187736)
chr6 (384-471)||(16851976-16852064)
chr6 (381-465)||(12753760-12753845)
chr6 (312-377)||(16853425-16853490)
chr6 (312-377)||(18877365-18877430)
chr6 (384-442)||(1392745-1392804)
chr6 (312-383)||(13433698-13433768)
chr6 (402-471)||(445907-445976)
chr6 (398-466)||(5106392-5106460)
chr6 (398-466)||(8441867-8441935)
chr6 (398-466)||(8450671-8450739)
chr6 (402-473)||(2675982-2676053)
chr6 (384-471)||(12780764-12780850)
chr6 (389-471)||(32112725-32112808)
chr6 (428-474)||(17144719-17144765)
chr6 (388-471)||(10133165-10133249)
chr6 (398-442)||(21987410-21987454)
chr6 (402-442)||(31116146-31116186)
chr6 (338-382)||(32545589-32545633)
[»] scaffold0182 (2 HSPs)
scaffold0182 (13-201)||(11129-11317)
scaffold0182 (197-379)||(11399-11587)
[»] chr7 (27 HSPs)
chr7 (1-201)||(47933527-47933726)
chr7 (198-358)||(47933803-47933963)
chr7 (381-637)||(11692084-11692359)
chr7 (384-463)||(27949370-27949450)
chr7 (384-471)||(46517380-46517468)
chr7 (312-383)||(47936410-47936481)
chr7 (388-473)||(44350809-44350895)
chr7 (384-471)||(27888371-27888459)
chr7 (328-383)||(39073319-39073374)
chr7 (384-442)||(14795249-14795306)
chr7 (384-442)||(15242241-15242298)
chr7 (384-465)||(48374442-48374524)
chr7 (402-466)||(12263458-12263522)
chr7 (388-471)||(22190028-22190112)
chr7 (388-474)||(6580009-6580096)
chr7 (385-471)||(25686839-25686926)
chr7 (312-379)||(39063934-39064001)
chr7 (385-466)||(6442259-6442341)
chr7 (312-382)||(25419808-25419877)
chr7 (350-383)||(5768348-5768381)
chr7 (398-447)||(32205189-32205238)
chr7 (384-442)||(32212873-32212932)
chr7 (388-466)||(11824165-11824242)
chr7 (479-521)||(17354634-17354676)
chr7 (420-466)||(31502504-31502550)
chr7 (402-459)||(31874117-31874174)
chr7 (312-377)||(39067115-39067180)
[»] chr4 (29 HSPs)
chr4 (1-199)||(43942417-43942617)
chr4 (196-383)||(43942123-43942310)
chr4 (14-133)||(2501242-2501361)
chr4 (216-375)||(2501722-2501884)
chr4 (384-466)||(8109050-8109133)
chr4 (384-471)||(43771215-43771303)
chr4 (398-471)||(50164484-50164557)
chr4 (398-466)||(722251-722319)
chr4 (398-466)||(754598-754666)
chr4 (384-471)||(26361311-26361399)
chr4 (387-466)||(34129406-34129486)
chr4 (384-466)||(45310951-45311034)
chr4 (384-466)||(47009283-47009366)
chr4 (312-377)||(51868294-51868359)
chr4 (384-471)||(24834667-24834755)
chr4 (388-471)||(39471246-39471330)
chr4 (312-383)||(34738002-34738073)
chr4 (409-466)||(24938444-24938501)
chr4 (350-383)||(26376843-26376876)
chr4 (384-471)||(20454627-20454715)
chr4 (329-373)||(26382345-26382389)
chr4 (409-465)||(37451042-37451098)
chr4 (312-379)||(2505234-2505300)
chr4 (312-383)||(21802764-21802835)
chr4 (398-471)||(22542470-22542543)
chr4 (338-383)||(31555392-31555437)
chr4 (479-527)||(10169752-10169800)
chr4 (312-372)||(27256579-27256639)
chr4 (398-458)||(40991607-40991667)
[»] chr8 (19 HSPs)
chr8 (384-471)||(16983483-16983571)
chr8 (392-465)||(7493353-7493427)
chr8 (398-471)||(1977191-1977264)
chr8 (338-383)||(21566224-21566269)
chr8 (384-471)||(17499238-17499324)
chr8 (328-379)||(32207843-32207894)
chr8 (385-466)||(9952762-9952843)
chr8 (384-471)||(5979969-5980056)
chr8 (312-383)||(10186222-10186293)
chr8 (332-383)||(11428342-11428393)
chr8 (388-466)||(24055932-24056011)
chr8 (312-382)||(14597490-14597560)
chr8 (384-440)||(34861195-34861252)
chr8 (402-471)||(17915905-17915970)
chr8 (312-376)||(32663981-32664045)
chr8 (312-383)||(4138185-4138256)
chr8 (381-471)||(8903941-8904032)
chr8 (381-466)||(13214589-13214675)
chr8 (405-463)||(43506632-43506690)
[»] chr2 (27 HSPs)
chr2 (48-133)||(26231047-26231132)
chr2 (328-383)||(37777729-37777784)
chr2 (388-465)||(24497287-24497363)
chr2 (384-471)||(38464252-38464340)
chr2 (384-458)||(12989293-12989368)
chr2 (311-379)||(3245036-3245103)
chr2 (387-466)||(6980126-6980206)
chr2 (384-471)||(9470170-9470257)
chr2 (384-471)||(26767764-26767852)
chr2 (328-383)||(22990028-22990083)
chr2 (312-383)||(7574336-7574406)
chr2 (384-466)||(12098871-12098953)
chr2 (312-383)||(16668919-16668989)
chr2 (385-471)||(32856139-32856226)
chr2 (312-383)||(37904078-37904149)
chr2 (388-466)||(45554653-45554732)
chr2 (328-370)||(22989171-22989213)
chr2 (384-465)||(10981613-10981693)
chr2 (327-383)||(40652776-40652832)
chr2 (408-466)||(19639187-19639245)
chr2 (408-466)||(19837780-19837838)
chr2 (403-465)||(30718350-30718412)
chr2 (408-466)||(36471866-36471924)
chr2 (382-442)||(11539544-11539605)
chr2 (382-465)||(4552841-4552925)
chr2 (312-379)||(29455077-29455144)
chr2 (384-471)||(34142142-34142230)
[»] chr5 (14 HSPs)
chr5 (314-383)||(10180434-10180503)
chr5 (384-474)||(41330398-41330487)
chr5 (386-466)||(28490727-28490808)
chr5 (386-471)||(41105575-41105661)
chr5 (312-379)||(37302191-37302258)
chr5 (348-382)||(11381254-11381288)
chr5 (405-465)||(10950181-10950241)
chr5 (329-373)||(11386776-11386820)
chr5 (384-471)||(37455438-37455529)
chr5 (381-466)||(28223776-28223862)
chr5 (428-469)||(4427333-4427374)
chr5 (384-471)||(28434825-28434909)
chr5 (390-442)||(30325883-30325936)
chr5 (384-464)||(34368456-34368537)
[»] chr1 (26 HSPs)
chr1 (388-465)||(15928650-15928726)
chr1 (391-471)||(33193139-33193219)
chr1 (381-471)||(8741223-8741314)
chr1 (402-471)||(41958172-41958241)
chr1 (384-471)||(30678914-30679002)
chr1 (384-471)||(8899103-8899191)
chr1 (312-383)||(13786056-13786126)
chr1 (398-465)||(19101619-19101686)
chr1 (337-380)||(22909502-22909545)
chr1 (411-465)||(27794249-27794303)
chr1 (398-474)||(10659787-10659862)
chr1 (384-471)||(11987715-11987803)
chr1 (388-459)||(39974207-39974279)
chr1 (385-471)||(6133629-6133715)
chr1 (398-465)||(12767346-12767413)
chr1 (312-379)||(25808017-25808083)
chr1 (328-379)||(39621645-39621696)
chr1 (328-383)||(42329348-42329403)
chr1 (389-442)||(25543457-25543511)
chr1 (384-466)||(28218049-28218134)
chr1 (382-471)||(33059894-33059984)
chr1 (405-471)||(37552974-37553040)
chr1 (384-460)||(2225324-2225401)
chr1 (398-471)||(41948164-41948237)
chr1 (402-466)||(29673569-29673633)
chr1 (480-520)||(30867563-30867603)
[»] scaffold0316 (2 HSPs)
scaffold0316 (314-383)||(5480-5549)
scaffold0316 (304-383)||(5380-5458)
[»] scaffold0018 (1 HSPs)
scaffold0018 (384-465)||(27907-27989)
[»] scaffold0045 (1 HSPs)
scaffold0045 (348-383)||(1389-1424)
[»] scaffold0564 (1 HSPs)
scaffold0564 (304-382)||(1848-1926)
[»] scaffold0098 (1 HSPs)
scaffold0098 (329-375)||(46074-46120)
[»] scaffold0061 (1 HSPs)
scaffold0061 (327-383)||(50601-50658)
[»] scaffold0017 (1 HSPs)
scaffold0017 (327-383)||(147976-148033)


Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 5885320 - 5885691
Alignment:
Q  1 agatttgcgttggttatcatataggtgaaagggaaaaaggaaaatatgaatgagctaaaatgtaacatctttttaacctttatgtggaagaatgtaaaca 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5885320 agatttgcgttggttatcatataggtgaaagggaaaaagggaaatatggatgagctaaaatgtaacatctttttaacctttatgtggaagaatgtaaaca 5885419  T
Q  101 gacaaattcaatggagatggtgtaaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5885420 gacaaattcaatggagatggtgtaaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttc 5885519  T
Q  201 tttcttattaagattgcaattgattagtgtaactctttttatcaaaattattatgtataatggcttgaaggagtgacacataagcaaagtagtagaatga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  5885520 tttcttattaagattgcaattgattagtgtaactctttttatcaaaattattatgtataatggcttga---agtgacacataagcaaagtagtagaatga 5885616  T
Q  301 tcaagaataaaagttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtata 375  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5885617 tcaagaataaaagttagaaagaggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtata 5885691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 54946329 - 54946528
Alignment:
Q  1 agatttgcgttggttatcatataggtgaaagggaaaaaggaaaatatgaatgagctaaaatgtaacatctttttaacctttatgtggaagaatgtaaaca 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  54946329 agatttgcgttggttatcatataggtgaaagggaaaaagggaaatatggatgagttaaaatgtaacatctttttaacctttatgtggaagaatgtaaaca 54946428  T
Q  101 gacaaattcaatggagatggtgtaaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttc 200  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  54946429 gacaaattcaatggtgatggtgtaaatatta-aacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaacgaaggatgtaaaagttc 54946527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 198 - 358
Target Start/End: Original strand, 54946605 - 54946765
Alignment:
Q  198 ttctttcttattaagattgcaattgattagtgtaactctttttatcaaaattattatgtataatggcttgaaggagtgacacataagcaaagtagtagaa 297  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54946605 ttctttcttattaagattgcaattgattagtataactctttttatcaaaattattatgtataatggtttgaaggagtgacacataagcaaagtagtagaa 54946704  T
Q  298 tgatcaagaataaaagttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtag 358  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  54946705 tgatcaagaataaaatttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtag 54946765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 384 - 465
Target Start/End: Original strand, 18427155 - 18427235
Alignment:
Q  384 ctagcaacactctctttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaat 465  Q
    |||||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||| |||  |||||||||||||||||    
T  18427155 ctagcaacactctctt-gaacaccctctctaatactcactctcttattggtttaaatcattgtgggtctacactttgaaaat 18427235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 388 - 471
Target Start/End: Complemental strand, 28529424 - 28529340
Alignment:
Q  388 caacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||| |||  |||||||||||||||||| ||||    
T  28529424 caacactctcttttgaacaccctctctaatactcactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacc 28529340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 384 - 471
Target Start/End: Original strand, 37776706 - 37776794
Alignment:
Q  384 ctagcaacactctctt-tgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||| || ||||||| ||||||||||||||||||| || | |||||||||| |||| |||||||||||||||||| ||||    
T  37776706 ctagcaacactcttttatgaacaccctctctaatactcactctcttagtggtttaaatcattgtaggtctacactttgaaaattgaacc 37776794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 384 - 471
Target Start/End: Original strand, 41451898 - 41451986
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||| |||  |||||| ||||||||||| ||||    
T  41451898 ctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctactctttgaaaattgaacc 41451986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 384 - 471
Target Start/End: Original strand, 52123959 - 52124047
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||||||| |||||| |||||||||||||||| || |||| |||||||||| |||  |||||||||||||||||| ||||    
T  52123959 ctagcaacactctcttttgaacactctctctaatactcactttcttattggtttaaatcattgtgggtctacactttgaaaattgaacc 52124047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 24734882 - 24734794
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||| |||  | |||| ||||||||||| ||||    
T  24734882 ctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggcctactctttgaaaattgaacc 24734794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 54949211 - 54949282
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    |||||||||||||  ||||||||  |||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  54949211 agttagaaaggggggcattggtgtggtgacatgtaagtaaagtgtagcttagaatacatgtatatatagata 54949282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 384 - 465
Target Start/End: Complemental strand, 46450242 - 46450161
Alignment:
Q  384 ctagcaacactctctttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaat 465  Q
    |||||||| |||| ||| ||||| ||||||||||||||||||| |||| |||||||||| |||  |||||||||||| ||||    
T  46450242 ctagcaacgctctattttaacactctctctaatactcactctcttattggtttaaatcattgtgggtctacactttgcaaat 46450161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 388 - 471
Target Start/End: Original strand, 20493452 - 20493536
Alignment:
Q  388 caacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||| |||||| ||||||| ||||||||||| |||| |||||||||| |||  |||||||||||||| ||| ||||    
T  20493452 caacactctcttttgaacactctctctattactcactctcttattggtttaaatcattgtgggtctacactttgaatattgaacc 20493536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 3744454 - 3744521
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatata 379  Q
    ||||||| ||||||  |||||||| ||||||  |||||||| ||||||||||||||||||||||||||    
T  3744454 agttagagaggggagaattggtgaggtgacacataagcaaagtgtaggttagaatacatgtatatata 3744521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 10179366 - 10179437
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    ||||||||| |||  ||||||||  |||||||||||||||| ||||| |||||||||||||||||| |||||    
T  10179366 agttagaaaagggggcattggtgtggtgacatgtaagcaaagtgtagtttagaatacatgtatatagagata 10179437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 39822090 - 39822168
Alignment:
Q  304 agaataaaagttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    |||||| |||||||||| |||  |||| ||||  ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  39822090 agaatataagttagaaaagggg-catttgtgagatgacatgtaagcaaagtgtagcttagaatacatgtatatatagata 39822168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 34209945 - 34209866
Alignment:
Q  304 agaataaaagttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    |||||| |||||||||| |||  |||| ||||  ||||||||||||||| ||||  |||||||||||||||||| |||||    
T  34209945 agaatataagttagaaaagggggcatttgtgagatgacatgtaagcaaagtgtaatttagaatacatgtatatagagata 34209866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 383
Target Start/End: Complemental strand, 52349623 - 52349553
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    ||||||||| |||||  ||||||| ||||||  || | ||||||||||||||||||||||||||||||||||    
T  52349623 agttagaaaagggatg-ttggtgaggtgacacataggaaaaatgtaggttagaatacatgtatatatagata 52349553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 383
Target Start/End: Original strand, 33519240 - 33519278
Alignment:
Q  345 taagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  33519240 taagcaatatgtaggttagaatacatgtatatatagata 33519278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 8824997 - 8825070
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||| |||| |||||||||||||| |||| |||||||| | ||| ||| || |||||||||||| ||||    
T  8824997 tttgaacactctctttaatactcactctcttattggtttaaattattgtgagtgtagactttgaaaattgaacc 8825070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 26215216 - 26215155
Alignment:
Q  318 aaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatata 379  Q
    |||||| | |||||||||||| |||  |||| ||||||||| ||||||||||||||||||||    
T  26215216 aaagggaaacattggtgaagtaacacataagtaaaatgtagtttagaatacatgtatatata 26215155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 29388612 - 29388685
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||| |||||||| || ||||||| ||||   |||||||| ||| ||||||||||||||||||| ||||    
T  29388612 tttgaacactctctctaacacccactctcttattgacttaaatcattgtgagtctacactttgaaaattgaacc 29388685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 50156678 - 50156751
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||| || | |||||||||||||| |||| |||||||||| |||  ||||||||||| |||||| ||||    
T  50156678 tttgaacactctttgtaatactcactctcttattggtttaaatcattgtgggtctacacttttaaaattgaacc 50156751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 410 - 466
Target Start/End: Complemental strand, 22604710 - 22604654
Alignment:
Q  410 ctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||| ||||||||| ||| ||||||||||| ||| |||||||| ||||||||||    
T  22604710 ctctaattctcactctcttataagtttaaatcattgtgagtctacattttgaaaatt 22604654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 466
Target Start/End: Original strand, 29588751 - 29588819
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||||| |||| ||| |||||||||| ||||  ||||||||| |||  ||||||||||||||||||    
T  29588751 tttgaacactctctataacactcactctcttattgatttaaatcattgtgggtctacactttgaaaatt 29588819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 20791473 - 20791414
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatca 442  Q
    |||||| |||||||||| |||||| |||||||||||||||| || |||| ||||||||||    
T  20791473 ctagcaccactctcttttgaacactctctctaatactcactttcttattggtttaaatca 20791414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 26297665 - 26297728
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtata 375  Q
    ||||||||||||||  |||||||| || |||  |||||||| ||||| ||||||||||||||||    
T  26297665 agttagaaaggggaaaattggtgaggtaacacataagcaaagtgtagtttagaatacatgtata 26297728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 345 - 383
Target Start/End: Complemental strand, 346641 - 346603
Alignment:
Q  345 taagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  346641 taagcaaaatgtagtttagaatacatgtatatagagata 346603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 471
Target Start/End: Complemental strand, 41387719 - 41387650
Alignment:
Q  402 aacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||| ||||| |||||||| |||| |||| | |||||||| |||  |||| ||||||||||||||||||    
T  41387719 aacactctctccaatactcaatctcttatttgattaaatcattgtgggtctgcactttgaaaattaaacc 41387650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 50516103 - 50516168
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatata 377  Q
    |||||||||| ||  |||||||||  || |||||||||||| ||||  ||||||||||||||||||    
T  50516103 agttagaaagcggggcattggtgagatgccatgtaagcaaagtgtatcttagaatacatgtatata 50516168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 442
Target Start/End: Complemental strand, 46161117 - 46161065
Alignment:
Q  391 cactctct-ttgaacacactctctaatactcactctcatattagtttaaatca 442  Q
    |||||||| ||| |||| ||||||||||||||||||| |||| ||||||||||    
T  46161117 cactctctcttggacactctctctaatactcactctcttattggtttaaatca 46161065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 235; Significance: 1e-129; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 133 - 379
Target Start/End: Complemental strand, 7610 - 7364
Alignment:
Q  133 aacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttctttcttattaagattgcaattgattagtgtaa 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7610 aacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttctttcttattaagattgcaattgattagtgtaa 7511  T
Q  233 ctctttttatcaaaattattatgtataatggcttgaaggagtgacacataagcaaagtagtagaatgatcaagaataaaagttagaaaggggatcattgg 332  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7510 ctctttttatcaaaagtattatgtataatggcttgaaggagtgacacataagcaaagtagtagaatgatcaagaataaaagttagaaaggggatcattgg 7411  T
Q  333 tgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatata 379  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||    
T  7410 tgaagtgacatgtaagcaaaatgtagcttaaaatacatgtatatata 7364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 16856377 - 16856177
Alignment:
Q  1 agatttgcgttggttatcatataggtgaaagggaaaaaggaaaatatgaatgagctaaaatgtaacatctttttaacctttatgtggaagaatgtaaaca 100  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16856377 agatttgcgttggttatcatataggtgaaagggaaaaagagaaatatggatgagctaaaatgtaacatctttttaacctttatgtggaagaatgtaaaca 16856278  T
Q  101 gacaaattcaatggagatggtgtaaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttc 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16856277 gacaaattcaatggcgatggtgtaaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttc 16856178  T
Q  201 t 201  Q
    |    
T  16856177 t 16856177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 198 - 377
Target Start/End: Complemental strand, 16856101 - 16855922
Alignment:
Q  198 ttctttcttattaagattgcaattgattagtgtaactctttttatcaaaattattatgtataatggcttgaaggagtgacacataagcaaagtagtagaa 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16856101 ttctttcttattaagattgcaattgattagtgtaactctttttatcaaaattattatgtataatggtttgaaggagtgacacataagcaaagtagtagaa 16856002  T
Q  298 tgatcaagaataaaagttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatata 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||    
T  16856001 tgatcaagaataaaagttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtagtttagaatatatatatata 16855922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 34905513 - 34905425
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||| |||  |||||||||||||||||| ||||    
T  34905513 ctagcaacactctcttttgaacaccctctctaatactcactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacc 34905425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 8643580 - 8643636
Alignment:
Q  327 cattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    |||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  8643580 catttgtgaggtgacatgtaagcaaaatgtagcttagaatacatgtatatatagata 8643636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 385 - 466
Target Start/End: Original strand, 16187438 - 16187518
Alignment:
Q  385 tagcaacactctctttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||||||||||||  | |||||||||||||||||||| | |||| |||||||| | |||| ||||||||||||||||||    
T  16187438 tagcaacactctcttttca-acactctctaatactcactcgcttattggtttaaataattgtaggtctacactttgaaaatt 16187518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 385 - 466
Target Start/End: Original strand, 16187656 - 16187736
Alignment:
Q  385 tagcaacactctctttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||||||||||||  | |||||||||||||||||||| | |||| |||||||| | |||| ||||||||||||||||||    
T  16187656 tagcaacactctcttttca-acactctctaatactcactcgcttattggtttaaataattgtaggtctacactttgaaaatt 16187736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 471
Target Start/End: Original strand, 16851976 - 16852064
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||||||| |||||  ||| ||||||| ||||||| |||| |||||||||| |||  |||||||||||||||||| ||||    
T  16851976 ctagcaacactctcttttgaacatcctccctaatacccactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacc 16852064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 381 - 465
Target Start/End: Original strand, 12753760 - 12753845
Alignment:
Q  381 atactagcaacactctctttg-aacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaat 465  Q
    ||||||||||||||||||||  ||||| ||||||||||||| ||||  ||||||||||||||| ||| ||| |||||  |||||||    
T  12753760 atactagcaacactctcttttcaacactctctctaatactcgctcttttattagtttaaatcattgtgagtgtacaccctgaaaat 12753845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 16853490 - 16853425
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatata 377  Q
    |||||||||  ||| ||||||||  |||||||||||||||| ||||| ||||||||||||||||||    
T  16853490 agttagaaaatggagcattggtgtggtgacatgtaagcaaagtgtagtttagaatacatgtatata 16853425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 18877430 - 18877365
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatata 377  Q
    ||||||||||||   ||||||| | ||||||  |||||||||||||||||||||||||||||||||    
T  18877430 agttagaaagggaggcattggtaaggtgacacctaagcaaaatgtaggttagaatacatgtatata 18877365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 1392804 - 1392745
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatca 442  Q
    ||||||||||||||||| |||||| || |||||||||||||||| |||| ||||||||||    
T  1392804 ctagcaacactctcttttgaacaccctatctaatactcactctcttattggtttaaatca 1392745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 13433698 - 13433768
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    ||||||||| |||||  ||||||| ||||||  || | ||||||||||||||||||||||||||||||||||    
T  13433698 agttagaaaagggatg-ttggtgaggtgacacataggaaaaatgtaggttagaatacatgtatatatagata 13433768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 471
Target Start/End: Complemental strand, 445976 - 445907
Alignment:
Q  402 aacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||| |||||||||||||| |||| |||| |||||||||| ||| | |||| |||||||||||| ||||    
T  445976 aacactctctctaatactcattctcttattggtttaaatcattgtgactctagactttgaaaattgaacc 445907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 466
Target Start/End: Complemental strand, 5106460 - 5106392
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    |||||||||||||||||||| |||||||  |||| |||||||||  |||  || |||||||||||||||    
T  5106460 tttgaacacactctctaatattcactctattattggtttaaatccttgtgggtgtacactttgaaaatt 5106392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 466
Target Start/End: Original strand, 8441867 - 8441935
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||||| ||||||||||||||||||  |||| ||||| || | || | ||||||||||||||||||    
T  8441867 tttgaacactctctctaatactcactcttttattggtttagattattgaaggtctacactttgaaaatt 8441935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 466
Target Start/End: Original strand, 8450671 - 8450739
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||||| ||||||||||||||||||  |||| ||||| || | || | ||||||||||||||||||    
T  8450671 tttgaacactctctctaatactcactcttttattggtttagattattgaaggtctacactttgaaaatt 8450739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 473
Target Start/End: Complemental strand, 2676053 - 2675982
Alignment:
Q  402 aacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaaccta 473  Q
    ||||| |||||||||||||||| |  |||| ||||||| || |||  ||||||| |||||||||||||||||    
T  2676053 aacactctctctaatactcacttttttattggtttaaaccattgtgggtctacattttgaaaattaaaccta 2675982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 471
Target Start/End: Original strand, 12780764 - 12780850
Alignment:
Q  384 ctagcaacactctctttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||| ||||| ||||||||| |||||||||| ||| || | |||| |||||||||| |||   ||||||||||||||||| ||||    
T  12780764 ctagcaatactct-tttgaacaccctctctaatattcattcccttattggtttaaatcattgtggatctacactttgaaaattgaacc 12780850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 471
Target Start/End: Original strand, 32112725 - 32112808
Alignment:
Q  389 aacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    |||||||||||| |||||  |||||||||| |||||||| ||||  ||||||||| |||   |||||||||||||||| |||||    
T  32112725 aacactctcttttgaacattctctctaatattcactctcttattgttttaaatcattgtggatctacactttgaaaataaaacc 32112808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 474
Target Start/End: Original strand, 17144719 - 17144765
Alignment:
Q  428 tattagtttaaatcactgtaagtctacactttgaaaattaaacctac 474  Q
    ||||||||||||||| |||  |||||||||||||||||| |||||||    
T  17144719 tattagtttaaatcattgtgggtctacactttgaaaatttaacctac 17144765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 388 - 471
Target Start/End: Original strand, 10133165 - 10133249
Alignment:
Q  388 caacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||| ||| || | || |||||||||||||  |||| |||||||||| |||   ||||||||||||||||| ||||    
T  10133165 caacactctcttttgaatactcactttaatactcactcttttattggtttaaatcattgtggttctacactttgaaaattgaacc 10133249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 442
Target Start/End: Complemental strand, 21987454 - 21987410
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatca 442  Q
    ||||||||| |||||||||||||||| || |||| ||||||||||    
T  21987454 tttgaacactctctctaatactcactttcttattggtttaaatca 21987410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 402 - 442
Target Start/End: Original strand, 31116146 - 31116186
Alignment:
Q  402 aacacactctctaatactcactctcatattagtttaaatca 442  Q
    ||||| ||||||||||||||||||| |||| ||||||||||    
T  31116146 aacactctctctaatactcactctcttattggtttaaatca 31116186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 32545633 - 32545589
Alignment:
Q  338 tgacatgtaagcaaaatgtaggttagaatacatgtatatatagat 382  Q
    ||||||||||||||| ||||| ||| |||||||||||||| ||||    
T  32545633 tgacatgtaagcaaagtgtagtttaaaatacatgtatatagagat 32545589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 177; Significance: 4e-95; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 11129 - 11317
Alignment:
Q  13 gttatcatataggtgaaagggaaaaaggaaaatatgaatgagctaaaatgtaacatctttttaacctttatgtggaagaatgtaaacagacaaattcaat 112  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11129 gttatcatataggtgaaagggaaaaagggaaatatggatgagctaaaatgtaacatctttttaacctttatgtggaagaatgtaaacagacaaattcaat 11228  T
Q  113 ggagatggtgtaaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttct 201  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11229 ggtgatggtgtaaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttct 11317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 197 - 379
Target Start/End: Original strand, 11399 - 11587
Alignment:
Q  197 gttctttcttattaagattgcaattgattagtgtaactctttt------tatcaaaattattatgtataatggcttgaaggagtgacacataagcaaagt 290  Q
    |||||||||||||||||||||||||||||| ||||||||||||      |||||||| ||| ||||||||||| |||| | |||||||||||||||||||    
T  11399 gttctttcttattaagattgcaattgattattgtaactctttttatttttatcaaaactatgatgtataatggattgaggaagtgacacataagcaaagt 11498  T
Q  291 agtagaatgatcaagaataaaagttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatata 379  Q
    || ||||||||||||||||||||||| |||| || |||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||    
T  11499 agaagaatgatcaagaataaaagttaaaaagagggtcattggtgaggtgacatgtaatcaaaatgtagcttagaatacatatatatata 11587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 173; Significance: 1e-92; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 47933527 - 47933726
Alignment:
Q  1 agatttgcgttggttatcatataggtgaaagggaaaaaggaaaatatgaatgagctaaaatgtaacatctttttaacctttatgtggaagaatgtaaaca 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47933527 agatttgcgttggttatcatataggtgaaagggaaaaagggaaatatggatgagttaaaatgtaacatctttttaacctttatgtggaagaatgtaaaca 47933626  T
Q  101 gacaaattcaatggagatggtgtaaatattataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagttc 200  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47933627 gacaaattcaatggtgatggtgtaaatatta-aacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaacgaaggatgtaaaagttc 47933725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 198 - 358
Target Start/End: Original strand, 47933803 - 47933963
Alignment:
Q  198 ttctttcttattaagattgcaattgattagtgtaactctttttatcaaaattattatgtataatggcttgaaggagtgacacataagcaaagtagtagaa 297  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47933803 ttctttcttattaagattgcaattgattagtataactctttttatcaaaattattatgtataatggtttgaaggagtgacacataagcaaagtagtagaa 47933902  T
Q  298 tgatcaagaataaaagttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtag 358  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47933903 tgatcaagaataaaatttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtag 47933963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 381 - 637
Target Start/End: Complemental strand, 11692359 - 11692084
Alignment:
Q  381 atactagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacctacttta- 478  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||   |     
T  11692359 atactagcaacactctcttttgaacacactctctaatactcactctcatattagtttaaatcactgtgagtttacactttgaaaattgaacctacacaaa 11692260  T
Q  479 -------gacatacattgatttcatgcaataaaagaatgaatattagagaatgttgttagccttcctccctca----------atatgataaacttaaaa 561  Q
           |||||||||||||||||| |||||||||| |||||||||||||  ||| ||| ||||||||  |            |||| ||||||||||||    
T  11692259 gtggtaggacatacattgatttcatccaataaaagagtgaatattagagagggttattaaccttcctcaattttataatatagatataataaacttaaaa 11692160  T
Q  562 taaacaacttagatataaactgatactatacaagtagaaattgatagatagacacggcttgtaaatataaaggcag 637  Q
    || ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  11692159 tatacaacttagatataaactgatactatacaagtagaaaatgatagatagacatggcttgtaaatataaaggcag 11692084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 384 - 463
Target Start/End: Complemental strand, 27949450 - 27949370
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaa 463  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| |||  |||||||||||||||    
T  27949450 ctagcaacactctcttttgaacactctctctaatactcactctcttattagtttaaatcattgtgggtctacactttgaaa 27949370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 46517468 - 46517380
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||||||| |||||  |||||||||||||| |||| |||| |||||||||| ||| ||||||||||||||||||| ||||    
T  46517468 ctagcaacactctcttttgaacagcctctctaatactcattctcttattggtttaaatcattgtgagtctacactttgaaaattgaacc 46517380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 47936410 - 47936481
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    |||||||||||||  ||||||||  |||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  47936410 agttagaaaggggggcattggtgtggtgacatgtaagtaaagtgtagcttagaatacatgtatatatagata 47936481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 388 - 473
Target Start/End: Original strand, 44350809 - 44350895
Alignment:
Q  388 caacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaaccta 473  Q
    ||||||||||||| ||||||  |||||||||||||||||  | || |||||||||| ||| ||||||||||||||||||| ||||||    
T  44350809 caacactctcttttgaacaccatctctaatactcactcttttgttggtttaaatcattgtgagtctacactttgaaaattgaaccta 44350895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 27888459 - 27888371
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||||||| || ||| |||||||| |||||||||| |||| |||||||||| |||  ||||||||||| |||||| ||||    
T  27888459 ctagcaacactctcttttgagcactctctctaacactcactctcttattggtttaaatcattgtgggtctacactttaaaaattgaacc 27888371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 39073319 - 39073374
Alignment:
Q  328 attggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    |||||||| ||||||  |||||||| ||||||||||||||||||||||||||||||    
T  39073319 attggtgaggtgacacataagcaaagtgtaggttagaatacatgtatatatagata 39073374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 14795306 - 14795249
Alignment:
Q  384 ctagcaacactctctttgaacacactctctaatactcactctcatattagtttaaatca 442  Q
    ||||||||||||| ||||||||| |||||| |||||||||||| |||||||||||||||    
T  14795306 ctagcaacactct-tttgaacactctctcttatactcactctcttattagtttaaatca 14795249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 15242298 - 15242241
Alignment:
Q  384 ctagcaacactctctttgaacacactctctaatactcactctcatattagtttaaatca 442  Q
    ||||||||||||| ||||||||| |||||| |||||||||||| |||||||||||||||    
T  15242298 ctagcaacactct-tttgaacactctctcttatactcactctcttattagtttaaatca 15242241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 384 - 465
Target Start/End: Original strand, 48374442 - 48374524
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaat 465  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| | || |||||||| | ||| ||| ||||||||| ||||    
T  48374442 ctagcaacactctcttttgaacactctctctaatactcactctcttgttggtttaaattattgtgagtatacactttggaaat 48374524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 402 - 466
Target Start/End: Original strand, 12263458 - 12263522
Alignment:
Q  402 aacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||| |||||||||||||||| || |||| |||||||||| |||  ||||||||||||||||||    
T  12263458 aacactctctctaatactcactatcttattggtttaaatcattgtgggtctacactttgaaaatt 12263522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 388 - 471
Target Start/End: Complemental strand, 22190112 - 22190028
Alignment:
Q  388 caacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||| |||||| |||||||||||||||||   |||| |||||||||| ||   |||||||||||||||||| ||||    
T  22190112 caacactctcttttgaacaccctctctaatactcactcgtttattggtttaaatcattgcgggtctacactttgaaaattgaacc 22190028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 388 - 474
Target Start/End: Original strand, 6580009 - 6580096
Alignment:
Q  388 caacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacctac 474  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||| |||||||| | |||  ||| | | |||||||||| |||||||    
T  6580009 caacactctcttttgaacactctctctaatactcactctcttattggtttaaattattgtgggtccatattttgaaaattgaacctac 6580096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 25686839 - 25686926
Alignment:
Q  385 tagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    |||||||||||||||| |||||  || ||||||||||| | || |||| |||||||||| |||  |||||||||||||||||| ||||    
T  25686839 tagcaacactctcttttgaacattctttctaatactcattatcttattggtttaaatcattgtgggtctacactttgaaaattgaacc 25686926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 39063934 - 39064001
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatata 379  Q
    ||||||||||||   ||||||| |  |||||  |||||||||||||||||||||||||||||||||||    
T  39063934 agttagaaagggaggcattggtaagatgacacataagcaaaatgtaggttagaatacatgtatatata 39064001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 466
Target Start/End: Complemental strand, 6442341 - 6442259
Alignment:
Q  385 tagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    |||||||||| ||||| ||||||  ||| |||||||||||||  |||| |||||||||| |||  ||||||||||||||||||    
T  6442341 tagcaacactttcttttgaacactatctttaatactcactcttttattggtttaaatcattgtgggtctacactttgaaaatt 6442259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 25419808 - 25419877
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagat 382  Q
    ||||||||| |||||  ||||||| ||||||  || | |||||||||||||||||||||||||||||||||    
T  25419808 agttagaaaagggatg-ttggtgaggtgacacataggaaaaatgtaggttagaatacatgtatatatagat 25419877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 383
Target Start/End: Original strand, 5768348 - 5768381
Alignment:
Q  350 aaaatgtaggttagaatacatgtatatatagata 383  Q
    ||||||||||||||||||||||||||||||||||    
T  5768348 aaaatgtaggttagaatacatgtatatatagata 5768381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 32205238 - 32205189
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgta 447  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||| ||||    
T  32205238 tttgaacatcctctctaatactcactctcttattagtttaaatcattgta 32205189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 442
Target Start/End: Original strand, 32212873 - 32212932
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatca 442  Q
    ||||||||||||||||| |||||| || | |||||||||||||| |||| ||||||||||    
T  32212873 ctagcaacactctcttttgaacaccctatataatactcactctcttattggtttaaatca 32212932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 466
Target Start/End: Complemental strand, 11824242 - 11824165
Alignment:
Q  388 caacactctctttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    |||||||||||||  | ||||||||||||||||||| || ||||  ||||||||| |||  || |||||||||||||||    
T  11824242 caacactctcttttga-acactctctaatactcactttcttattgatttaaatcattgtgggtttacactttgaaaatt 11824165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 521
Target Start/End: Original strand, 17354634 - 17354676
Alignment:
Q  479 gacatacattgatttcatgcaataaaagaatgaatattagaga 521  Q
    |||||||||||||||||| |||||||||||||| | |||||||    
T  17354634 gacatacattgatttcatccaataaaagaatgagtgttagaga 17354676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 420 - 466
Target Start/End: Original strand, 31502504 - 31502550
Alignment:
Q  420 cactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||| |||| |||||||||| ||| |||||||||||||||||||    
T  31502504 cactctcttattggtttaaatcattgtgagtctacactttgaaaatt 31502550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 31874174 - 31874117
Alignment:
Q  402 aacacactctctaatactcactctcatattagtttaaatcactgtaagtctacacttt 459  Q
    ||||| ||||| ||||||||||||| |||  |||||||||| ||| ||||||||||||    
T  31874174 aacactctctcgaatactcactctcttataggtttaaatcattgtgagtctacacttt 31874117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 39067115 - 39067180
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatata 377  Q
    |||||||||||||    ||||||| ||||||  || | ||||||||||||||||||||||||||||    
T  39067115 agttagaaagggggatgttggtgaggtgacacataggaaaaatgtaggttagaatacatgtatata 39067180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 4e-86; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 43942617 - 43942417
Alignment:
Q  1 agatttgcgttggttatcatataggtgaaagggaaaaaggaaaatatgaatgagctaaaatgtaacatctttttaacctttatgtggaagaatgtaaaca 100  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  43942617 agatttgcgttggttatcatgtaggtgaaagggaaaaagggaaatatggatgatctaaaatgtaacatctttttaacctttatatggaagaatgtaaaca 43942518  T
Q  101 gacaaattcaatggagatggtgtaaatat--tataacaaataatcaatgtttttaaaaaatagtagttgaaggggttataagaatgaaggatgtaaaagt 198  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43942517 gacaaattcaatggtgatggtgtaaatattatataacaaataatcaatgtttttaaaaaatagtagttgaaggagttataagaatgaaggatgtaaaagt 43942418  T
Q  199 t 199  Q
    |    
T  43942417 t 43942417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 196 - 383
Target Start/End: Complemental strand, 43942310 - 43942123
Alignment:
Q  196 agttctttcttattaagattgcaattgattagtgtaactctttttatcaaaattattatgtataatggcttgaaggagtgacacataagcaaagtagtag 295  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| ||    
T  43942310 agttctttcttattaaggttgcaattgattagtgtaactctttttatcaaaattattatgtataatggtttgagggagtgacacataagcagagtagaag 43942211  T
Q  296 aatgatcaagaataaaagttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  43942210 aatgatcaagaataaaaattagaaaggggatcattggtgaagtgacatgtaagcaaaatgtagattagaatacatgtatatagagata 43942123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 2501242 - 2501361
Alignment:
Q  14 ttatcatataggtgaaagggaaaaaggaaaatatgaatgagctaaaatgtaacatctttttaacctttatgtggaagaatgtaaacagacaaattcaatg 113  Q
    |||| |||||||||||||||||||||||||||    |||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  2501242 ttattatataggtgaaagggaaaaaggaaaattaagatgatctaaaatgtaacatctttttaagctttatgtgaaagaatgtaaacagacacattcaatg 2501341  T
Q  114 gagatggtgtaaatattata 133  Q
      ||||||||||||||||||    
T  2501342 atgatggtgtaaatattata 2501361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 216 - 375
Target Start/End: Original strand, 2501722 - 2501884
Alignment:
Q  216 gcaattgattagtgtaactctttttatcaaaattattatgtataatggcttgaaggagtgacacataagcaaagtagtagaatg----atcaagaataaa 311  Q
    ||||| |||||||||||||||||||||||||||||   |||||||||| |||| ||||||||||||||||||||||| ||||||    || |||||| ||    
T  2501722 gcaatagattagtgtaactctttttatcaaaatta---tgtataatggtttgagggagtgacacataagcaaagtagaagaatgattaattaagaat-aa 2501817  T
Q  312 agtt---agaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtata 375  Q
    ||||   | |||  || ||||||||||  || |||||||||||||||||| ||| ||||||||||||    
T  2501818 agttaaaaaaaaaagggtcattggtgagatgtcatgtaagcaaaatgtagcttaaaatacatgtata 2501884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 466
Target Start/End: Complemental strand, 8109133 - 8109050
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||||||||||||| |||||| |||||||||||||||| || |||| |||||||||| |||  ||||||||||||||||||    
T  8109133 ctagcaacactctcttttgaacactctctctaatactcactttcttattggtttaaatcattgtgggtctacactttgaaaatt 8109050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 43771303 - 43771215
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    |||||||| |||||||| |||||| |||| |||||||||||||| |||| |||||||||| |||  |||||||||||||||||| ||||    
T  43771303 ctagcaacgctctcttttgaacaccctctttaatactcactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacc 43771215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 50164557 - 50164484
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||| ||||||||| |||||| || |||| |||||||||| ||| ||||||||||||||||||| ||||    
T  50164557 tttgaacactctctctaatgctcactttcttattggtttaaatcattgtgagtctacactttgaaaattgaacc 50164484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 398 - 466
Target Start/End: Complemental strand, 722319 - 722251
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||||| ||||||||||||||||||| |||| |||||||||| |||  ||||||||||| ||||||    
T  722319 tttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctacactttaaaaatt 722251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 398 - 466
Target Start/End: Original strand, 754598 - 754666
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||||| ||||||||||||||||||| |||| |||||||||| |||  ||||||||||| ||||||    
T  754598 tttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctacactttaaaaatt 754666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 471
Target Start/End: Original strand, 26361311 - 26361399
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||||||| |||||| ||||||||||||||||| | |||| |||||||||| | |  |||||||||||||| ||| ||||    
T  26361311 ctagcaacactctcttttgaacaccctctctaatactcactcacttattggtttaaatcattatgggtctacactttgaatattgaacc 26361399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 387 - 466
Target Start/End: Original strand, 34129406 - 34129486
Alignment:
Q  387 gcaacactctctt-tgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||||||||| |||||||| |||||||||||||||||  |||| ||||||| || ||| |||| ||||||||||||||    
T  34129406 gcaacactctcttctgaacacaatctctaatactcactcttttattggtttaaaccattgtgagtccacactttgaaaatt 34129486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 384 - 466
Target Start/End: Original strand, 45310951 - 45311034
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||||| ||||||| ||||  ||||||||||||| |||||| ||||  ||||||||| ||||||||| |||||||||||||    
T  45310951 ctagcaacattctcttttgaactgactctctaatacttactctcttattgatttaaatcattgtaagtcttcactttgaaaatt 45311034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 384 - 466
Target Start/End: Complemental strand, 47009366 - 47009283
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||||| ||||||| |||||| |||||||||||||||| || |||| |||||||||| |||   |||||||||||||||||    
T  47009366 ctagcaacattctcttttgaacaccctctctaatactcactttcttattggtttaaatcattgtgtatctacactttgaaaatt 47009283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 51868359 - 51868294
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatata 377  Q
    |||||||||||||  ||||||| | ||||||  ||||||||||||| |||||||||||||||||||    
T  51868359 agttagaaaggggggcattggtaaggtgacacataagcaaaatgtatgttagaatacatgtatata 51868294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 24834755 - 24834667
Alignment:
Q  384 ctagcaacactctctttgaa-cacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||||||| || | | |||||||||| |||||||| |||| |||||||| | |||  |||||||||||||||||| ||||    
T  24834755 ctagcaacactctcttttaaactctctctctaatagtcactctcttattggtttaaattattgtgggtctacactttgaaaattgaacc 24834667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 388 - 471
Target Start/End: Complemental strand, 39471330 - 39471246
Alignment:
Q  388 caacactctctttgaa-cacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||| || ||  ||||||||||||||||||| |||| |||||||||| |||  |||||||||||||| ||| ||||    
T  39471330 caacactctcttttaaacattctctctaatactcactctcttattggtttaaatcattgtgggtctacactttgaagattgaacc 39471246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 34738002 - 34738073
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    ||||||||||||   ||||||| | ||||||  || |||||||||||||||||||||||||||||| |||||    
T  34738002 agttagaaagggaggcattggtaaggtgacacatatgcaaaatgtaggttagaatacatgtatatagagata 34738073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 466
Target Start/End: Original strand, 24938444 - 24938501
Alignment:
Q  409 tctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||||||| |||||| |||| |||||||||| |||| ||||||||||| ||||||    
T  24938444 tctctaatacttactctcttattggtttaaatcattgtaggtctacactttaaaaatt 24938501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 26376876 - 26376843
Alignment:
Q  350 aaaatgtaggttagaatacatgtatatatagata 383  Q
    ||||||||||||||||||||||||||||||||||    
T  26376876 aaaatgtaggttagaatacatgtatatatagata 26376843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 20454715 - 20454627
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||| ||||||| |||||| |||||||| |||||||||  ||||  ||||||||| |||   ||||||||||||||||| ||||    
T  20454715 ctagcaacattctcttttgaacactctctctaacactcactctgttattgatttaaatcattgtggatctacactttgaaaattgaacc 20454627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 26382389 - 26382345
Alignment:
Q  329 ttggtgaagtgacatgtaagcaaaatgtaggttagaatacatgta 373  Q
    ||||||| |||||||||||| ||||||||| ||||||||||||||    
T  26382389 ttggtgaggtgacatgtaaggaaaatgtagcttagaatacatgta 26382345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 465
Target Start/End: Original strand, 37451042 - 37451098
Alignment:
Q  409 tctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaat 465  Q
    |||||||||||||||||  |||| |||||||||| ||  ||||||||||||||||||    
T  37451042 tctctaatactcactcttttattggtttaaatcattgcgagtctacactttgaaaat 37451098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 2505234 - 2505300
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatata 379  Q
    ||||||||| |||||  ||||||| ||||||  || | ||||||||||||||||||||||||||||||    
T  2505234 agttagaaaagggatg-ttggtgaggtgacacataggaaaaatgtaggttagaatacatgtatatata 2505300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 383
Target Start/End: Complemental strand, 21802835 - 21802764
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    |||||||||||||  ||||||| | ||||||  || || |||||||| |||||||||||||||||| |||||    
T  21802835 agttagaaaggggggcattggtaaggtgacacataggcgaaatgtagcttagaatacatgtatatagagata 21802764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 22542543 - 22542470
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||| || | |||||||||||||| ||||||||||||||| |||  | |||  ||||||||||| ||||    
T  22542543 tttgaacactctttttaatactcactctcttattagtttaaatcattgtgggactattctttgaaaattgaacc 22542470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 31555437 - 31555392
Alignment:
Q  338 tgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    ||||||||||||||| ||||| ||| |||||||||||||| |||||    
T  31555437 tgacatgtaagcaaagtgtagcttataatacatgtatataaagata 31555392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 527
Target Start/End: Original strand, 10169752 - 10169800
Alignment:
Q  479 gacatacattgatttcatgcaataaaagaatgaatattagagaatgttg 527  Q
    |||||| ||||||||||| |||||| ||| ||||||||||||| |||||    
T  10169752 gacatatattgatttcatccaataatagagtgaatattagagagtgttg 10169800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 372
Target Start/End: Complemental strand, 27256639 - 27256579
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgt 372  Q
    |||||||||||||  ||||||| | ||||||  || | |||||||||||||||||||||||    
T  27256639 agttagaaaggggggcattggtaaggtgacacataggaaaaatgtaggttagaatacatgt 27256579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 458
Target Start/End: Original strand, 40991607 - 40991667
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactt 458  Q
    ||||||||| |||||| |||||||||||  |||| |||||||||| |||  ||||||||||    
T  40991607 tttgaacactctctctgatactcactcttttattggtttaaatcattgtgggtctacactt 40991667  T

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Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 16983571 - 16983483
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||| ||| ||||||||||||||||||| ||||    
T  16983571 ctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgagtctacactttgaaaattgaacc 16983483  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 392 - 465
Target Start/End: Original strand, 7493353 - 7493427
Alignment:
Q  392 actctctt-tgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaat 465  Q
    |||||||| ||||||| || |||||||||||||||| |||| |||||||||| ||| ||||||||||||||||||    
T  7493353 actctcttatgaacactctttctaatactcactctcttattggtttaaatcattgtgagtctacactttgaaaat 7493427  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 1977191 - 1977264
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||||||||||||||||||  |||| |||||||||| |||   ||||||||||||||||| ||||    
T  1977191 tttgaacacactctctaatactcactcttttattggtttaaatcattgtggatctacactttgaaaattgaacc 1977264  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 21566224 - 21566269
Alignment:
Q  338 tgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  21566224 tgacatgtaagcaaagtgtaggttagaatacatgtatatatagata 21566269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 384 - 471
Target Start/End: Original strand, 17499238 - 17499324
Alignment:
Q  384 ctagcaacactctctttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||| |||||  || ||||||||||||||||||| |||| |||||||||| |||   ||||||||||||||||| ||||    
T  17499238 ctagcaacactct-tttgacaactctctctaatactcactctcttattggtttaaatcattgtggatctacactttgaaaattgaacc 17499324  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 328 - 379
Target Start/End: Complemental strand, 32207894 - 32207843
Alignment:
Q  328 attggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatata 379  Q
    |||||||| |||||||||||||||| ||||||||||||||||||| ||||||    
T  32207894 attggtgaggtgacatgtaagcaaagtgtaggttagaatacatgtgtatata 32207843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 385 - 466
Target Start/End: Original strand, 9952762 - 9952843
Alignment:
Q  385 tagcaacactctctttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    |||||||||||||||||||||| ||||  |||||||| | || |||| |||||||||| |||  || |||||||||||||||    
T  9952762 tagcaacactctctttgaacactctcttaaatactcattatcttattggtttaaatcattgtgggtttacactttgaaaatt 9952843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 5980056 - 5979969
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| |||| | ||||| || ||| |||  |||||||||||||| ||||    
T  5980056 ctagcaacactctcttttgaacactctctctaatactcactctcttatt-ggttaaaccattgtgagttcacactttgaaaattgaacc 5979969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 383
Target Start/End: Complemental strand, 10186293 - 10186222
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    |||||||||||||  ||||||| | ||||||  || || |||||||| ||||||||||||||||||||||||    
T  10186293 agttagaaaggggggcattggtaaggtgacacataggcgaaatgtagcttagaatacatgtatatatagata 10186222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 332 - 383
Target Start/End: Original strand, 11428342 - 11428393
Alignment:
Q  332 gtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    |||| ||||||  |||||||||||||| ||||||||||||||||||||||||    
T  11428342 gtgaggtgacacataagcaaaatgtagcttagaatacatgtatatatagata 11428393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 388 - 466
Target Start/End: Original strand, 24055932 - 24056011
Alignment:
Q  388 caacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||||||||| ||||||  ||||||| |||||||||| |||| |||||||| | |||  ||||||||||||||||||    
T  24055932 caacactctcttttgaacactttctctaacactcactctcttattggtttaaataattgtgggtctacactttgaaaatt 24056011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 14597490 - 14597560
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagat 382  Q
    |||||||||||||   |||||| | ||||||| || ||||||||||| |||||||||||||||||| ||||    
T  14597490 agttagaaaggggggaattggtaaggtgacatataggcaaaatgtagcttagaatacatgtatatagagat 14597560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 34861195 - 34861252
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaat 440  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||| |||| ||||||||    
T  34861195 ctagcaacactctcttttgaacaccctccctaatactcactctcttattggtttaaat 34861252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 471
Target Start/End: Complemental strand, 17915970 - 17915905
Alignment:
Q  402 aacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||| |||||||||||||||| |  ||||||||||||||| |||||||    |||||||||||||||||    
T  17915970 aacactctctctaatactcactttattattagtttaaatcattgtaagt----actttgaaaattaaacc 17915905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 32664045 - 32663981
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatat 376  Q
    |||||||||||| |  |||||||| ||||||  |||||||| ||||| |||||||||||||||||    
T  32664045 agttagaaagggaaaaattggtgaggtgacacataagcaaagtgtagtttagaatacatgtatat 32663981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 383
Target Start/End: Complemental strand, 4138256 - 4138185
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    |||||||||||||  ||||||| | ||||||  || || |||||||| |||||||||||||||||| |||||    
T  4138256 agttagaaaggggggcattggtaaggtgacacataggcgaaatgtagcttagaatacatgtatatagagata 4138185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 471
Target Start/End: Complemental strand, 8904032 - 8903941
Alignment:
Q  381 atactagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    |||||| ||||||||||||| |||||   | |||| |||| |||||| |||| |||||||||| |||  |||||||||||||||||| ||||    
T  8904032 atactaacaacactctcttttgaacatcttttctattacttactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacc 8903941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 466
Target Start/End: Complemental strand, 13214675 - 13214589
Alignment:
Q  381 atactagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    |||||||||||| ||| ||| |||||| ||| ||||||||| ||||| |||||||||| |  | |||  ||||||||||||||||||    
T  13214675 atactagcaacattctattttgaacactctccctaatactcgctctcttattagtttataatattgtgggtctacactttgaaaatt 13214589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 463
Target Start/End: Complemental strand, 43506690 - 43506632
Alignment:
Q  405 acactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaa 463  Q
    |||||||||||||||||||||| |||| | |||||||| |||  |||||||| ||||||    
T  43506690 acactctctaatactcactctcttattggcttaaatcattgtgggtctacacattgaaa 43506632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 26231047 - 26231132
Alignment:
Q  48 gaatgagctaaaatgtaacatctttttaacctttatgtggaagaatgtaaacagacaaattcaatggagatggtgtaaatattata 133  Q
    |||||| |||||||||||||||| ||||| ||||||||||||||||||||||| ||| || |||||  ||||||||||||| ||||    
T  26231047 gaatgatctaaaatgtaacatctctttaagctttatgtggaagaatgtaaacatacacatccaatgatgatggtgtaaataatata 26231132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 37777784 - 37777729
Alignment:
Q  328 attggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  37777784 attggtgaggtgacatgtaagcaaagtgtaggttagaatacatgtatatatagata 37777729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 388 - 465
Target Start/End: Complemental strand, 24497363 - 24497287
Alignment:
Q  388 caacactctctttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaat 465  Q
    ||||||||||| | || |||||||||||||||||||||| ||||||||||||||||| |  |||||||||||||||||    
T  24497363 caacactctctcttaa-acactctctaatactcactctcctattagtttaaatcactcttggtctacactttgaaaat 24497287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 38464340 - 38464252
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||| ||||||||| |||||| |||||||||||| |||||| |||| |||||||||| |||  |||||||||||||||||| ||||    
T  38464340 ctagcaatactctcttttgaacactctctctaatacttactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacc 38464252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 458
Target Start/End: Complemental strand, 12989368 - 12989293
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactt 458  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||| |||  ||||||||||    
T  12989368 ctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctacactt 12989293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 311 - 379
Target Start/End: Complemental strand, 3245103 - 3245036
Alignment:
Q  311 aagttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatata 379  Q
    |||||||||| |||| |||| |||| |||||||||||||||| ||||| ||||||||||||||||||||    
T  3245103 aagttagaaaaggga-catttgtgaggtgacatgtaagcaaagtgtagtttagaatacatgtatatata 3245036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 387 - 466
Target Start/End: Original strand, 6980126 - 6980206
Alignment:
Q  387 gcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    |||||||||||||| ||||||  |||||||||||||||||| |||||||| |||||| |||  ||||| ||||||||||||    
T  6980126 gcaacactctcttttgaacactttctctaatactcactctcttattagttgaaatcattgtgggtctatactttgaaaatt 6980206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 9470257 - 9470170
Alignment:
Q  384 ctagcaacactctctt-tgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    |||||||||||||||| |||| || |||||||||| |||||||| |||| |||||||||| |||  |||||||||||||||||| ||||    
T  9470257 ctagcaacactctcttctgaa-accctctctaatattcactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacc 9470170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 471
Target Start/End: Original strand, 26767764 - 26767852
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||| ||||| |||||| || |||||||||||||||  |||| |||||||||| ||| |||||||| |||||||||| ||||    
T  26767764 ctagcaacactttcttttgaacactctatctaatactcactcttttattggtttaaatcattgtgagtctacaatttgaaaattgaacc 26767852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 22990028 - 22990083
Alignment:
Q  328 attggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    |||||||| ||||||  ||||||||||||| |||||||||||||||||||||||||    
T  22990028 attggtgaggtgacacataagcaaaatgtacgttagaatacatgtatatatagata 22990083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 7574336 - 7574406
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    ||||||||| |||||  ||||||| ||||||  || | ||||||||||||||||||||||||||||||||||    
T  7574336 agttagaaaagggatg-ttggtgaggtgacacataggaaaaatgtaggttagaatacatgtatatatagata 7574406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 384 - 466
Target Start/End: Original strand, 12098871 - 12098953
Alignment:
Q  384 ctagcaacactctctttgaacacactctctaatactcactctcatattagtttaaatca-ctgtaagtctacactttgaaaatt 466  Q
    ||||||||| ||| |||| | ||||||| |||||||||||||| |||||||||||||||  ||| ||| |||||||||||||||    
T  12098871 ctagcaacattctatttgga-acactctttaatactcactctcttattagtttaaatcatttgtgagtttacactttgaaaatt 12098953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 16668919 - 16668989
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    ||||||||| |||||  ||||||| ||||||  || | ||||||||||||||||||||||||||||||||||    
T  16668919 agttagaaaagggatg-ttggtgaggtgacacataggaaaaatgtaggttagaatacatgtatatatagata 16668989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 32856139 - 32856226
Alignment:
Q  385 tagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    |||||||||||| ||| |||||| || ||||||||||| |||| |||| |||||||||||| |   ||||||||||||||||| ||||    
T  32856139 tagcaacactctattttgaacaccctttctaatactcaatctcttattggtttaaatcactatggatctacactttgaaaattcaacc 32856226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 37904078 - 37904149
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    ||||||| |||||  ||||||||| ||||||  || | ||||||||| ||||||||||||||||||||||||    
T  37904078 agttagagaggggggcattggtgaggtgacacataggaaaaatgtagcttagaatacatgtatatatagata 37904149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 388 - 466
Target Start/End: Complemental strand, 45554732 - 45554653
Alignment:
Q  388 caacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||||||||| |||||  |||||||||||||||| || |||| |||||||||| |||  |||||||||| |||||||    
T  45554732 caacactctcttttgaacattctctctaatactcactttcttattggtttaaatcattgtgggtctacacttggaaaatt 45554653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 370
Target Start/End: Original strand, 22989171 - 22989213
Alignment:
Q  328 attggtgaagtgacatgtaagcaaaatgtaggttagaatacat 370  Q
    |||||||| |||||||||||||||| |||||||||||||||||    
T  22989171 attggtgaggtgacatgtaagcaaagtgtaggttagaatacat 22989213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 465
Target Start/End: Complemental strand, 10981693 - 10981613
Alignment:
Q  384 ctagcaacactctctttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaat 465  Q
    |||||||||||||||  |||||| | ||||||||||||||||| |||| |||||||||| |||  |||||||| ||| ||||    
T  10981693 ctagcaacactctcta-gaacactccctctaatactcactctcttattggtttaaatcattgtgggtctacacattggaaat 10981613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 40652776 - 40652832
Alignment:
Q  327 cattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    |||| |||| |||||||||||| ||| ||||| |||||||||||||||||| |||||    
T  40652776 catttgtgaggtgacatgtaaggaaagtgtagcttagaatacatgtatatagagata 40652832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 466
Target Start/End: Complemental strand, 19639245 - 19639187
Alignment:
Q  408 ctctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    |||| ||||| |||||||| |||| |||||||||| |||| |||| |||||||||||||    
T  19639245 ctctataatattcactctcttattggtttaaatcattgtaggtctgcactttgaaaatt 19639187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 466
Target Start/End: Complemental strand, 19837838 - 19837780
Alignment:
Q  408 ctctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    |||| ||||| |||||||| |||| |||||||||| |||| |||| |||||||||||||    
T  19837838 ctctataatattcactctcttattggtttaaatcattgtaggtctgcactttgaaaatt 19837780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 465
Target Start/End: Original strand, 30718350 - 30718412
Alignment:
Q  403 acacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaat 465  Q
    |||| |||||||||| ||||| |  |||| |||||||||| ||| ||||||||||||||||||    
T  30718350 acactctctctaatattcacttttttattggtttaaatcattgtgagtctacactttgaaaat 30718412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 466
Target Start/End: Original strand, 36471866 - 36471924
Alignment:
Q  408 ctctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||||||||||||||  |||| |||||||||| ||| ||| |||| ||||||||||    
T  36471866 ctctctaatactcactcttttattggtttaaatcattgtgagtttacattttgaaaatt 36471924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 442
Target Start/End: Complemental strand, 11539605 - 11539544
Alignment:
Q  382 tactagcaacactctctttga-acacactctctaatactcactctcatattagtttaaatca 442  Q
    |||||| |||| ||||||| | |||| ||||||||||||||||||| |||| ||||||||||    
T  11539605 tactaggaacattctcttttacacactctctctaatactcactctcttattggtttaaatca 11539544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 465
Target Start/End: Original strand, 4552841 - 4552925
Alignment:
Q  382 tactagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaat 465  Q
    |||||||||||||| |||| |||||   | ||| |||||||||||| |||| |||||||||| |||  |||||||| ||||||||    
T  4552841 tactagcaacactcacttttgaacattttttctgatactcactctcttattggtttaaatcattgtgggtctacacattgaaaat 4552925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 379
Target Start/End: Complemental strand, 29455144 - 29455077
Alignment:
Q  312 agttagaaag-gggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatata 379  Q
    |||||||||| ||||| |||||||||||||||  || | ||||||||| ||||||||||| ||||||||    
T  29455144 agttagaaagagggat-attggtgaagtgacacataggaaaaatgtagcttagaatacatatatatata 29455077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 384 - 471
Target Start/End: Original strand, 34142142 - 34142230
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||||||| ||| |   ||| ||||| |||||||| |||| ||||||| || ||| | ||||||||||||||||| ||||    
T  34142142 ctagcaacactctctttagaatattttctttaatattcactctcttattggtttaaaccattgtgactctacactttgaaaattgaacc 34142230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 10180503 - 10180434
Alignment:
Q  314 ttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    ||||||||||   ||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||    
T  10180503 ttagaaagggaggcattggtgaggtgacacataagcaaaatgtaggttagaatacatgtatatatagata 10180434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 384 - 474
Target Start/End: Original strand, 41330398 - 41330487
Alignment:
Q  384 ctagcaacactctctttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacctac 474  Q
    ||||||||||||| |||||||||||||| |||||||   | || |||| |||||||||| ||| ||||||||||||||||||| |||||||    
T  41330398 ctagcaacactct-tttgaacacactctttaatactacatttcttattggtttaaatcattgtgagtctacactttgaaaattgaacctac 41330487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 386 - 466
Target Start/End: Original strand, 28490727 - 28490808
Alignment:
Q  386 agcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||||||||||| |||||| ||||||||||||||||||| |||| |||||||| | |||  ||||||||||| ||||||    
T  28490727 agcaacactctcttttgaacactctctctaatactcactctcttattggtttaaattattgtgggtctacactttcaaaatt 28490808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 386 - 471
Target Start/End: Original strand, 41105575 - 41105661
Alignment:
Q  386 agcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||||| || ||| ||||||||||||| ||||| |||| ||||||||||||||  || | ||||||||||||| ||||    
T  41105575 agcaacactctcttttgagcactctctctaatactcgctctcttattggtttaaatcactgtgggtatgcactttgaaaattgaacc 41105661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 37302191 - 37302258
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatata 379  Q
    |||||||||||   |||||||| | ||||||  || ||||||||||||||||||||||||||||||||    
T  37302191 agttagaaaggaagtcattggtaaggtgacacatatgcaaaatgtaggttagaatacatgtatatata 37302258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 382
Target Start/End: Complemental strand, 11381288 - 11381254
Alignment:
Q  348 gcaaaatgtaggttagaatacatgtatatatagat 382  Q
    |||||||||||||||||||||||||||||||||||    
T  11381288 gcaaaatgtaggttagaatacatgtatatatagat 11381254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 465
Target Start/End: Complemental strand, 10950241 - 10950181
Alignment:
Q  405 acactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaat 465  Q
    ||||||||||||| ||| |||| ||||||||||||||| | | |||||| |||||||||||    
T  10950241 acactctctaatattcattctcttattagtttaaatcattatgagtctatactttgaaaat 10950181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 11386820 - 11386776
Alignment:
Q  329 ttggtgaagtgacatgtaagcaaaatgtaggttagaatacatgta 373  Q
    ||||||| |||||||||||| ||||||||| ||||||||||||||    
T  11386820 ttggtgaggtgacatgtaaggaaaatgtagcttagaatacatgta 11386776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 37455529 - 37455438
Alignment:
Q  384 ctagcaacactctc-tttgaaca----cactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    |||||||||||||| ||||||||    | ||||||||||||||||||| |||| |||| ||| | ||| ||||||||||||||||||| ||||    
T  37455529 ctagcaacactctcttttgaacaccctccctctctaatactcactctcttattggttt-aattattgtgagtctacactttgaaaattgaacc 37455438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 466
Target Start/End: Original strand, 28223776 - 28223862
Alignment:
Q  381 atactagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    |||||| |||||| |||||| |||||  ||||||||||||||||||  |||| |||||||||| | |  ||||| ||||||||||||    
T  28223776 atactaacaacaccctcttttgaacatcctctctaatactcactcttttattggtttaaatcattatgggtctatactttgaaaatt 28223862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Complemental strand, 4427374 - 4427333
Alignment:
Q  428 tattagtttaaatcactgtaagtctacactttgaaaattaaa 469  Q
    |||| |||||||||| ||| ||||||||||||||||||||||    
T  4427374 tatttgtttaaatcattgtgagtctacactttgaaaattaaa 4427333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 471
Target Start/End: Original strand, 28434825 - 28434909
Alignment:
Q  384 ctagcaacactctctttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||| ||||||| ||   ||||||||||||||| | || |||| |||||||||| |||  ||||| |||||||||||| ||||    
T  28434825 ctagcaacattctcttttaa---actctctaatactcattttcttattggtttaaatcattgtgggtctaaactttgaaaattgaacc 28434909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 442
Target Start/End: Original strand, 30325883 - 30325936
Alignment:
Q  390 acactctcttt-gaacacactctctaatactcactctcatattagtttaaatca 442  Q
    ||||||||||| |||||| |||||||||||||||| || |||| ||||||||||    
T  30325883 acactctcttttgaacactctctctaatactcactttcttattggtttaaatca 30325936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 464
Target Start/End: Complemental strand, 34368537 - 34368456
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaa 464  Q
    ||||||||||||||||| || ||| ||||||   || ||||||| |||| |||||||||| |||  ||||||||||||||||    
T  34368537 ctagcaacactctcttttgagcactctctctgtcacccactctcttattggtttaaatcattgtgggtctacactttgaaaa 34368456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 388 - 465
Target Start/End: Complemental strand, 15928726 - 15928650
Alignment:
Q  388 caacactctctttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaat 465  Q
    |||||||||||||  | |||||||||||||||||||||  |||| |||||||||||||||||||||||| ||||||||    
T  15928726 caacactctcttttga-acactctctaatactcactcttttattggtttaaatcactgtaagtctacaccttgaaaat 15928650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 391 - 471
Target Start/End: Complemental strand, 33193219 - 33193139
Alignment:
Q  391 cactctctttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||||||  ||||||||||||| |||| |||| |||||||||| |||  |||||||||||||||||| ||||    
T  33193219 cactctctttgaacactttctctaatactcattctcttattggtttaaatcattgtgggtctacactttgaaaattgaacc 33193139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 381 - 471
Target Start/End: Original strand, 8741223 - 8741314
Alignment:
Q  381 atactagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    |||||||||||||||||||| |||||   |||||||||||||||||| ||||||||||||||| |||  || || |||||||||||| ||||    
T  8741223 atactagcaacactctcttttgaacaatttctctaatactcactctcttattagtttaaatcattgtgtgtttatactttgaaaattgaacc 8741314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 402 - 471
Target Start/End: Complemental strand, 41958241 - 41958172
Alignment:
Q  402 aacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||| || |||||||||||||||| |||| ||||||||||||||  |||||||||||||||||| ||||    
T  41958241 aacactctttctaatactcactctcttattggtttaaatcactgtgggtctacactttgaaaattgaacc 41958172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 471
Target Start/End: Original strand, 30678914 - 30679002
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||| ||| || ||| |||||||| |||||||||| |||| | |||||||| ||| ||||||||||||||||||| ||||    
T  30678914 ctagcaacactcttttttgagcactctctctaacactcactctcttattggcttaaatcattgtgagtctacactttgaaaattgaacc 30679002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 8899191 - 8899103
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||| |||| |||||||| | |||    |||||||||||||||| ||||    
T  8899191 ctagcaacaatctcttttgaacactctctctaatactcactctcttattggtttaaattattgtggacctacactttgaaaattgaacc 8899103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 383
Target Start/End: Complemental strand, 13786126 - 13786056
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    ||||||||| |||||  ||||||| ||||||  || | ||||||||||||||||||||||||||||||||||    
T  13786126 agttagaaaagggatg-ttggtgaggtgacacataggaaaaatgtaggttagaatacatgtatatatagata 13786056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 398 - 465
Target Start/End: Original strand, 19101619 - 19101686
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaat 465  Q
    ||||||||| |||||||||||||||| || |||| |||||||||| || |  ||||||||||||||||    
T  19101619 tttgaacactctctctaatactcactttcttattggtttaaatcattgcagatctacactttgaaaat 19101686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 22909502 - 22909545
Alignment:
Q  337 gtgacatgtaagcaaaatgtaggttagaatacatgtatatatag 380  Q
    |||||||||||||||| ||||| |||||||||||||||||||||    
T  22909502 gtgacatgtaagcaaagtgtagtttagaatacatgtatatatag 22909545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 465
Target Start/End: Complemental strand, 27794303 - 27794249
Alignment:
Q  411 tctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaat 465  Q
    |||||||||||||||| ||||||||||||||||||| | |||| | |||||||||    
T  27794303 tctaatactcactctcttattagtttaaatcactgtcaatctatattttgaaaat 27794249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 474
Target Start/End: Original strand, 10659787 - 10659862
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacctac 474  Q
    |||||||||  |||||||||| ||||||| |||| ||||||||||  ||  |||||||||||||||||| |||||||    
T  10659787 tttgaacactttctctaatac-cactctcttattggtttaaatcatcgtgggtctacactttgaaaattgaacctac 10659862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 11987803 - 11987715
Alignment:
Q  384 ctagcaacactctctttgaa-cacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||||||||||| || ||| || |||||||  ||||||| || | |||||||||| |||  |||||||||||||||||| ||||    
T  11987803 ctagcaacactctcttttaaacactctttctaatatccactctcttaatggtttaaatcattgtgggtctacactttgaaaattgaacc 11987715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 39974207 - 39974279
Alignment:
Q  388 caacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacacttt 459  Q
    ||||||||||||| |||||  || |||||||||||||||| |||| |||||||||| ||||| ||| ||||||    
T  39974207 caacactctcttttgaacattctttctaatactcactctcttattggtttaaatcattgtaaatctgcacttt 39974279  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 6133629 - 6133715
Alignment:
Q  385 tagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    |||||||||||||||| |||||  ||||||||||||||||||| |||| |||| ||||| |||  || || |||||||||||| ||||    
T  6133629 tagcaacactctcttttgaacatcctctctaatactcactctcttattggttt-aatcattgtgggtgtagactttgaaaattgaacc 6133715  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 465
Target Start/End: Original strand, 12767346 - 12767413
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaat 465  Q
    |||||| || ||||||||||||||||||  |||| |||||||||| | | |||||||||||| |||||    
T  12767346 tttgaaaaccctctctaatactcactcttttattggtttaaatcattatgagtctacactttaaaaat 12767413  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 25808017 - 25808083
Alignment:
Q  312 agttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatata 379  Q
    ||||||||| |||||  ||||||| ||||||  || | ||||||||||||||||||||||||||||||    
T  25808017 agttagaaaagggatg-ttggtgaggtgacacataggaaaaatgtaggttagaatacatgtatatata 25808083  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 379
Target Start/End: Complemental strand, 39621696 - 39621645
Alignment:
Q  328 attggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatata 379  Q
    |||||||| ||||||  |||||||| ||||| ||||||||||||||||||||    
T  39621696 attggtgaggtgacacataagcaaagtgtagtttagaatacatgtatatata 39621645  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 42329403 - 42329348
Alignment:
Q  328 attggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    |||||||| ||||||||||| |||| ||||| ||||||||||||||| || |||||    
T  42329403 attggtgaggtgacatgtaatcaaattgtagtttagaatacatgtatgtagagata 42329348  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 389 - 442
Target Start/End: Complemental strand, 25543511 - 25543457
Alignment:
Q  389 aacactctcttt-gaacacactctctaatactcactctcatattagtttaaatca 442  Q
    |||||||||||| |||||| |||||||||||||||| || |||| ||||||||||    
T  25543511 aacactctcttttgaacactctctctaatactcactatcttattggtttaaatca 25543457  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 466
Target Start/End: Original strand, 28218049 - 28218134
Alignment:
Q  384 ctagcaacactctcttt-gaacacactc--tctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||||||||||||||| |||||| | |  ||||||||||||| || ||||| ||||||| |||||   |||||||||||||||||    
T  28218049 ctagcaacactctcttttgaacactcccgctctaatactcactatcttattaatttaaattactgtggttctacactttgaaaatt 28218134  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 471
Target Start/End: Original strand, 33059894 - 33059984
Alignment:
Q  382 tactagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||| ||||||||| ||||||  | |||| ||| ||||||| |||| ||||||| || ||| ||| |||||||| |||||||||||    
T  33059894 tactagcaatactctcttttgaacactttttctagtacccactctcttattggtttaaaacattgtgagtgtacactttaaaaattaaacc 33059984  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 471
Target Start/End: Original strand, 37552974 - 37553040
Alignment:
Q  405 acactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||| |||||||||||||| ||||  ||||||||| |||   |||||||||||||||| |||||    
T  37552974 acactctttaatactcactctcttattgatttaaatcattgtggatctacactttgaaaataaaacc 37553040  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 460
Target Start/End: Complemental strand, 2225401 - 2225324
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttg 460  Q
    |||| |||||||||||| |||||| || | | ||||||||| || |||| ||||||||||||||  ||||||||||||    
T  2225401 ctagtaacactctcttttgaacacgctttgtgatactcactttcttattggtttaaatcactgtcggtctacactttg 2225324  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 41948164 - 41948237
Alignment:
Q  398 tttgaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaattaaacc 471  Q
    ||||||||| |||||||| |||||||||| ||||  ||||||||| |||   | ||||||||||||||| ||||    
T  41948164 tttgaacactctctctaacactcactctcttattgatttaaatcattgtggatttacactttgaaaattgaacc 41948237  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 402 - 466
Target Start/End: Complemental strand, 29673633 - 29673569
Alignment:
Q  402 aacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaatt 466  Q
    ||||| |||||||||||||||| |  |||| |||||||| | ||||  |||||||||||||||||    
T  29673633 aacactctctctaatactcacttttttattggtttaaataattgtagttctacactttgaaaatt 29673569  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 520
Target Start/End: Original strand, 30867563 - 30867603
Alignment:
Q  480 acatacattgatttcatgcaataaaagaatgaatattagag 520  Q
    ||||||||||||||||| || ||||| ||||||||||||||    
T  30867563 acatacattgatttcatccattaaaaaaatgaatattagag 30867603  T

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Target: scaffold0316 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 5480 - 5549
Alignment:
Q  314 ttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    |||||||||||| ||||||| | ||||||  || | ||||||||||||||||||||||||||||||||||    
T  5480 ttagaaaggggaacattggtaaggtgacacataggaaaaatgtaggttagaatacatgtatatatagata 5549  T

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Target: scaffold0316; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 5380 - 5458
Alignment:
Q  304 agaataaaagttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagata 383  Q
    |||||| |||||||||| |||  |||| ||||  ||||||||||||||| ||||| |||||||||||||||||| |||||    
T  5380 agaatataagttagaaaagggg-catttgtgagatgacatgtaagcaaagtgtagtttagaatacatgtatatagagata 5458  T

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Target: scaffold0018 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 384 - 465
Target Start/End: Complemental strand, 27989 - 27907
Alignment:
Q  384 ctagcaacactctcttt-gaacacactctctaatactcactctcatattagtttaaatcactgtaagtctacactttgaaaat 465  Q
    |||||||||| |||||| |||||| |||| |||||||||||||| |||| |||||||||| |||  |||||||||||| ||||    
T  27989 ctagcaacaccctcttttgaacactctctttaatactcactctcttattggtttaaatcattgtgggtctacactttggaaat 27907  T

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Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 348 - 383
Target Start/End: Original strand, 1389 - 1424
Alignment:
Q  348 gcaaaatgtaggttagaatacatgtatatatagata 383  Q
    ||||||||||||||||||||||||||||||||||||    
T  1389 gcaaaatgtaggttagaatacatgtatatatagata 1424  T

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Target: scaffold0564 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 382
Target Start/End: Complemental strand, 1926 - 1848
Alignment:
Q  304 agaataaaagttagaaaggggatcattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtatatatagat 382  Q
    |||||| |||||||||| |||  |||| ||||  ||||||||||||||| ||||| |||||||| ||||||||| ||||    
T  1926 agaatataagttagaaaagggggcatttgtgagatgacatgtaagcaaagtgtagtttagaataaatgtatatagagat 1848  T

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Target: scaffold0098 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 375
Target Start/End: Complemental strand, 46120 - 46074
Alignment:
Q  329 ttggtgaagtgacatgtaagcaaaatgtaggttagaatacatgtata 375  Q
    ||||||| |||| || |||||||||||||| ||||||||||||||||    
T  46120 ttggtgaggtgatatataagcaaaatgtagcttagaatacatgtata 46074  T

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Target: scaffold0061 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 383
Target Start/End: Complemental strand, 50658 - 50601
Alignment:
Q  327 cattggtgaagtgacatgtaagcaaaa-tgtaggttagaatacatgtatatatagata 383  Q
    |||| |||| |||||||||||| |||| ||||| |||||||||||||||||| |||||    
T  50658 catttgtgaggtgacatgtaaggaaaagtgtagcttagaatacatgtatatagagata 50601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 147976 - 148033
Alignment:
Q  327 cattggtgaagtgacatgtaagcaaaa-tgtaggttagaatacatgtatatatagata 383  Q
    |||| |||| |||||||||||| |||| ||||| |||||||||||||||||| |||||    
T  147976 catttgtgaggtgacatgtaaggaaaagtgtagcttagaatacatgtatatagagata 148033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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