View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19073_high_32 (Length: 250)

Name: NF19073_high_32
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19073_high_32
NF19073_high_32
[»] chr6 (8 HSPs)
chr6 (13-250)||(21312609-21312846)
chr6 (13-115)||(21312349-21312451)
chr6 (89-167)||(21156917-21156995)
chr6 (94-155)||(21281243-21281304)
chr6 (98-172)||(21246120-21246194)
chr6 (154-224)||(33705617-33705687)
chr6 (90-155)||(21266880-21266945)
chr6 (90-146)||(33717600-33717656)
[»] scaffold0060 (2 HSPs)
scaffold0060 (100-163)||(10596-10659)
scaffold0060 (86-145)||(19905-19964)
[»] chr5 (2 HSPs)
chr5 (100-167)||(21638585-21638652)
chr5 (131-172)||(21658684-21658725)
[»] scaffold0016 (1 HSPs)
scaffold0016 (105-168)||(46244-46307)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 21312609 - 21312846
Alignment:
Q  13 tactactaaaactaaatgttagctcaatgtgaattattgggtccgggcagttacttagtcctcatgtacacaagtcatttaataagtaaatcttcctctt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21312609 tactactaaaactaaatgttagctcaatgtgaattattgggtccgggcagttacttagtcctcatgtacacaagtcatttaataagtaaatcttcctctt 21312708  T
Q  113 ggttgttaaagaacattcgatgtgggactgttgaaactaaactattttatatgtcatgttgctgagaattggtatatgcttgtctttacaaattagaaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21312709 ggttgttaaagaacattcgatgtgggactgttgaaactaaactattttatatgtcatgttgctgagaattggtatatgcttgtctttacaaattagaaaa 21312808  T
Q  213 taacagaacctgtagcatgttacaaagaagaagatatc 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21312809 taacagaacctgtagcatgttacaaagaagaagatatc 21312846  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 21312349 - 21312451
Alignment:
Q  13 tactactaaaactaaatgttagctcaatgtgaattattgggtccgggcagttacttagtcctcatgtacacaagtcatttaataagtaaatcttcctctt 112  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21312349 tactactaaaattaaatgctagctcaatgtgaattattgggtccgaacagttacttagtcctcatgtacacaggtcatttaataagtaaatcttcctctt 21312448  T
Q  113 ggt 115  Q
    |||    
T  21312449 ggt 21312451  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 21156917 - 21156995
Alignment:
Q  89 atttaataagtaaatcttcctcttggttgttaaagaacattcgatgtgggactgttgaaactaaactattttatatgtc 167  Q
    |||| ||| |||| |||||||||||||||||  ||||  |||||||||||||| || |||| |||||||| ||||||||    
T  21156917 attttataggtaattcttcctcttggttgttttagaatcttcgatgtgggactatttaaaccaaactattctatatgtc 21156995  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 21281243 - 21281304
Alignment:
Q  94 ataagtaaatcttcctcttggttgttaaagaacattcgatgtgggactgttgaaactaaact 155  Q
    |||| ||||||||| | ||||||||||||| ||  || ||||||||||||||||||||||||    
T  21281243 ataactaaatcttcttgttggttgttaaaggaccatcaatgtgggactgttgaaactaaact 21281304  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 21246194 - 21246120
Alignment:
Q  98 gtaaatcttcctcttggttgttaaagaacattcgatgtgggactgttgaaactaaactattttatatgtcatgtt 172  Q
    ||||||||||||||| |||||| |||||| | | |||||||||| |   ||| ||||||||||||||||| ||||    
T  21246194 gtaaatcttcctcttagttgtttaagaacctccaatgtgggactatcataaccaaactattttatatgtcttgtt 21246120  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 33705617 - 33705687
Alignment:
Q  154 ctattttatatgtcatgttgctgagaattggtatatgcttgtctttacaaattagaaaataacagaacctg 224  Q
    |||||||||||||||||||||||||||||   || ||||  ||||||||| || |||| ||| ||||||||    
T  33705617 ctattttatatgtcatgttgctgagaattttgatttgctattctttacaactttgaaagtaatagaacctg 33705687  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 21266880 - 21266945
Alignment:
Q  90 tttaataagtaaatcttcctcttggttgttaaagaacattcgatgtgggactgttgaaactaaact 155  Q
    ||||||||||||||| |||||||||||||| | | ||   ||||||||||||||| |||| |||||    
T  21266880 tttaataagtaaatcctcctcttggttgtttatgtaccaccgatgtgggactgttcaaaccaaact 21266945  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 33717600 - 33717656
Alignment:
Q  90 tttaataagtaaatcttcctcttggttgttaaagaacattcgatgtgggactgttga 146  Q
    ||||||||| ||||||||||||| ||||||  || || |||||||||||||| ||||    
T  33717600 tttaataagaaaatcttcctcttagttgtttcagcaccttcgatgtgggactcttga 33717656  T

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Target: scaffold0060 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 10659 - 10596
Alignment:
Q  100 aaatcttcctcttggttgttaaagaacattcgatgtgggactgttgaaactaaactattttata 163  Q
    |||||||||||||| ||||| |||||| |||||||||||||| || |||| |||||||||||||    
T  10659 aaatcttcctcttgtttgtttaagaactttcgatgtgggactattcaaaccaaactattttata 10596  T

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Target: scaffold0060; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 19905 - 19964
Alignment:
Q  86 gtcatttaataagtaaatcttcctcttggttgttaaagaacattcgatgtgggactgttg 145  Q
    ||||||||||| | |||||||||||||| |||||  ||||| |||||| |||||||||||    
T  19905 gtcatttaataggaaaatcttcctcttgcttgtttgagaaccttcgatatgggactgttg 19964  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 21638652 - 21638585
Alignment:
Q  100 aaatcttcctcttggttgttaaagaacattcgatgtgggactgttgaaactaaactattttatatgtc 167  Q
    |||||||||||| ||||| | |||||| |||||||||||||| || |||| |||||||||||||||||    
T  21638652 aaatcttcctctaggttggttaagaactttcgatgtgggactattcaaaccaaactattttatatgtc 21638585  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 21658725 - 21658684
Alignment:
Q  131 gatgtgggactgttgaaactaaactattttatatgtcatgtt 172  Q
    ||||||||||| |||||||||||||||| |||||||| ||||    
T  21658725 gatgtgggactattgaaactaaactattctatatgtcttgtt 21658684  T

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Target: scaffold0016 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 46307 - 46244
Alignment:
Q  105 ttcctcttggttgttaaagaacattcgatgtgggactgttgaaactaaactattttatatgtca 168  Q
    ||||||||| ||||| |||||| |||||||||||||| || |||| | ||||| ||||||||||    
T  46307 ttcctcttgcttgtttaagaaccttcgatgtgggactattcaaaccatactatattatatgtca 46244  T

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