View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19073_high_6 (Length: 548)
Name: NF19073_high_6
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19073_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 505; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 10 - 534
Target Start/End: Complemental strand, 29662172 - 29661648
Alignment:
| Q |
10 |
cacagaacagtaccgcaaacaaatgttggttttcatgcccaccatccataatttgttttgaggacgcttcattttgagaagatgtgagagtccagctata |
109 |
Q |
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| T |
29662172 |
cacagaacagtgccgcaaacaaatgttggttttcatgcccaccatccataatttgttttgaggacgcttcattttgagataatgtgagagtccagttata |
29662073 |
T |
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| Q |
110 |
acatgtaaacgactatttaggacacctaacttagacacagggcccttcctttgctgtcaataagcacaaagcaacagacataactaacatcataattaag |
209 |
Q |
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| T |
29662072 |
acatgtaaacgactatttaggacacctaacttagacacagggcccttcctttgctgtcaataagcacaaagcaacagacataactaacatcataattaag |
29661973 |
T |
|
| Q |
210 |
gagctgcaataacaaaaattaattataattcagctagaagtcactatgagcagaatgaactctcccgaggagactaaataacatacaagtatttgtaagc |
309 |
Q |
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| T |
29661972 |
gagctgcaataacaaaaattaattataattcagctagaagtcactatgagcagaatgaactctcccgaggagactaaataacatgcaagtatttgtaagc |
29661873 |
T |
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| Q |
310 |
aaaggcttaagatagcagaattcacaatttcatataaagatgcaatttaggcaaatagttgaaacaatggcatcaacatttagctaaaatattacatact |
409 |
Q |
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| T |
29661872 |
aaaggcttaagatagcagaattcacaatttcatataaagatgcaatttaggcaaatagttgaaacaatggcatcaacatttagctaaaatattacatact |
29661773 |
T |
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| Q |
410 |
tggatgatgcagaacaaatcggaatcaattacaatacttgttgggtgttgatttgggattaatacagtactatttatgataccgtagcaaggttacatag |
509 |
Q |
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| T |
29661772 |
tggatgatgcagaacaaatcggaatcaattacaatacttgttgggtgttgatttgggattaatacagtactatttatgataccgtagcaaggttacatag |
29661673 |
T |
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| Q |
510 |
attttttccatgccactattaagtg |
534 |
Q |
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| T |
29661672 |
attttttccatgccactattaagtg |
29661648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 33183919 - 33184206
Alignment:
| Q |
13 |
agaacagtaccgcaaacaaatgttggttttcatgcccaccatccataatttgttttgaggacgcttcattttgagaagatgtgagagtccagctataaca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33183919 |
agaacagtaccgcaaacaaatgttggttttcatgcccaccatccattaactttgttgaggacgcttcattttgagaagatgcgagagtccagctataaca |
33184018 |
T |
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| Q |
113 |
tgtaaacgactatttaggacacctaacttagacacagggcccttcctttgctgtcaataagcacaaagcaacagacataactaacatcataattaaggag |
212 |
Q |
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| T |
33184019 |
tgtagacgactatgtgggacacccgacttagcca--gggcccttcctttgttgtcaataagcacaaagcaggggacataactaacatcataattaaggag |
33184116 |
T |
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| Q |
213 |
ctgcaataacaaaaattaattataattcagctagaagtcactatgagc--------agaatgaactctcccgaggagactaaataacata |
294 |
Q |
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||||| |||||||||||||||||| |||||| |||| |||| |||||| |||||||||||||| |||||||||||||||||| |
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| T |
33184117 |
ctgcagtaacaaaaattaattatagttcagcaagaattcacaatgagcagattagtagaatgaactctccaaaggagactaaataacata |
33184206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 17755503 - 17755564
Alignment:
| Q |
67 |
ttgaggacgcttcattttgagaagatgtgagagtccagctataacatgtaaacgactattta |
128 |
Q |
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| T |
17755503 |
ttgaggacgcttcattttgagataatgtgagagtccagttataacatgtaaacgactattta |
17755564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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