View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19073_low_11 (Length: 432)
Name: NF19073_low_11
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19073_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 30 - 413
Target Start/End: Complemental strand, 34958404 - 34958016
Alignment:
| Q |
30 |
tggatccctccaactaatctgaaattgtagcttttctaaaatggtagctaattgatcaacccttttttgtgcattccttccaatgactctcaacctatca |
129 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34958404 |
tggatccctccaactgatcagaaattgtagcttttctaaaatggtagctaattgatcaacccttttttgtgcattcctgccaatgactctcaacctatca |
34958305 |
T |
|
| Q |
130 |
tacctctttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcagaatttgttgtatcagcaccagataat---- |
225 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34958304 |
tacctccttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcagaatttgttgtatcagcaccagataatataa |
34958205 |
T |
|
| Q |
226 |
-gttgcatctatgtgataaggatgctcatgcttcttgaaattataatcatccaaaccaatcttgaaaagatagaaactcaccaaaggtatcattggctct |
324 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34958204 |
tgttgcatctatgtgacaaggatgctcatgctttttgaaattataattatccaaaccaatcttgaaaagatagaaactcaccaaaggtatcattggctct |
34958105 |
T |
|
| Q |
325 |
ggatacaaaagcacacataagcaaaaaatatgaaaaagcactgtttcaccaagttcaacatttttgtggattcttgcagcaccaagaag |
413 |
Q |
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| T |
34958104 |
ggatacaaaagcacacataagcaaaaaatatgaaaaagcactgtttcaccaagttcaacatttttgtggattcttgcagcaccaagaag |
34958016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 3922225 - 3922584
Alignment:
| Q |
13 |
aatataaatgtagattttggatccctccaactaatctgaaattgtagcttttctaaaatggtagctaattgatcaacccttttttgtgcattccttccaa |
112 |
Q |
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||||||||||||| | |||||||||||||||| ||| || |||||||||||||||||||||| || |||| |||||||||||||||| ||||||| |||| |
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| T |
3922225 |
aatataaatgtagctcttggatccctccaactgatcagagattgtagcttttctaaaatggtggccaattcatcaacccttttttgtccattcctaccaa |
3922324 |
T |
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| Q |
113 |
tgactctcaacctatcatacctctttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcagaatttgttgtatc |
212 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
3922325 |
tgactctcaacctatcatacctccttctcaaatgttcacctccaatttgagttggaaagaaaacaagttcttcttctaaatcatcataatttgttgtatc |
3922424 |
T |
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| Q |
213 |
agcaccagataatgttgcatctatgtgataaggatgctcatgcttcttgaaattataatcatccaaaccaatcttgaaaagatagaaactcaccaaaggt |
312 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3922425 |
agcaccagataatgttgcatctatgtgacaaggatgctcatgcttcttgaaattataattatccaaaccaatcttgaaaagatagaaactcaccaaaggt |
3922524 |
T |
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| Q |
313 |
atcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgtttca |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3922525 |
atcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgcttca |
3922584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 370 - 413
Target Start/End: Original strand, 50131576 - 50131619
Alignment:
| Q |
370 |
tcaccaagttcaacatttttgtggattcttgcagcaccaagaag |
413 |
Q |
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| T |
50131576 |
tcaccaagttcaacatttttgtggattcttgcagcaccaagaag |
50131619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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