View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19073_low_18 (Length: 383)
Name: NF19073_low_18
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19073_low_18 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 20486 - 20735
Alignment:
| Q |
18 |
aataaaccttcaatttcttctcctcttcctcttcttcatcatcaccagactcgtcttcactcgtagaactaaaaccacttttacttgctttcctcttcga |
117 |
Q |
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| T |
20486 |
aataaaccttcaatttcttctcctcttcctcttcttcatcatcaccagactcgtcttcactcgtagaactaaaaccacttttacttgctttcctcttcga |
20585 |
T |
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| Q |
118 |
cgatccactactaccctcgtcttcactctcatactcttcaagtaaaaactcctcttcattatcacccacttcatcaattttcttcttcaaattcccattc |
217 |
Q |
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| T |
20586 |
cgctccactactaccctcgtcttcactctcatactcttcaagtaaaaactcctcttcattatcacccacttcatcaattttcttcttcaaattcccactc |
20685 |
T |
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| Q |
218 |
ttattacttttttcataatcattatcagattttcctaacagagacacaaa |
267 |
Q |
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| T |
20686 |
ttattacttttttcataatcattatcaaattttcctaacacagacacaaa |
20735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 303 - 379
Target Start/End: Original strand, 20771 - 20847
Alignment:
| Q |
303 |
gatgattattgttgacaacaaaatctctcatccaatcaggttcatcatctgaaccttgattctcattcttctcactc |
379 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20771 |
gatgattattgttgaccacaaaatctctcatccaatcaggttcatcatctgaaccttgattctcattcttcccactc |
20847 |
T |
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