View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19073_low_24 (Length: 313)
Name: NF19073_low_24
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19073_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 2928770 - 2928493
Alignment:
| Q |
10 |
attatactaaaatgcaggtaaatgtagtcaattgcggttgtgatgtttttgtaaaaaattat---------------gaccgcacttgcagttgtggacc |
94 |
Q |
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| T |
2928770 |
attatactaaaatgcaggtaaatgtagtcaattgcggttgtgatgtttttgtaaaaaattataatattttatattatgaccgcacttgcagttgtggacc |
2928671 |
T |
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| Q |
95 |
gtaatttaactctaggatttaatatgtataggtctcggaggccacttgctaatttcagctaatgaatgataatagagacttattggtttatgttggtttt |
194 |
Q |
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| T |
2928670 |
gtaatttaattctagg------------taggtctcggaggccacttgctaatttcagctaatgaatgataatagagacttattggtttatgttggtttt |
2928583 |
T |
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| Q |
195 |
cgtgttaattaggttgcgcgtgttgttgctcgacactttgctgaacaggtaacaaagaacttgtggttttatgctatacataggatgctt |
284 |
Q |
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| T |
2928582 |
cgtgttaattaggttgcgcgtgttgttgctcgacactttgttgaacaggtaacaaagaacttgtggttttatgctatacataggatgctt |
2928493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 138 - 295
Target Start/End: Original strand, 2310431 - 2310584
Alignment:
| Q |
138 |
acttgctaatttcagctaatgaatgataatagagacttattggtttatgttggttttcgtgttaattaggttgcgcgtgttgttgctcgacactttgctg |
237 |
Q |
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| T |
2310431 |
acttgctaatttcagctaatg----ataatagagactaatcagtttatgttggttttcgtgttaattaggttgcgcatgttgttgctcgacactttgctg |
2310526 |
T |
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| Q |
238 |
aacaggtaacaaagaacttgtggttttatgctatacataggatgcttcagatatttgt |
295 |
Q |
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| T |
2310527 |
aaaagataacaaagagcttctggttttatgctatacataggatgcttgagatatttgt |
2310584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 2310267 - 2310397
Alignment:
| Q |
10 |
attatactaaaatgcaggtaaatgtagtcaattgcggttgtgatgtttttgtaaaaa----------attatgaccgcacttgcagttgtggaccgtaat |
99 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||| ||||||||| ||| ||| |||| ||| || ||||||||||||| ||| |
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| T |
2310267 |
attacactaaaattcaggtaaatgtagtcaattgcggttgtgacgtttttgtagaaaattttaatatattgtgactgcatttccagttgtggaccgcaat |
2310366 |
T |
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| Q |
100 |
ttaactctaggatttaatatgtataggtctc |
130 |
Q |
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| T |
2310367 |
ttaattctatgatttaatatggataggtctc |
2310397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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