View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19073_low_25 (Length: 310)
Name: NF19073_low_25
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19073_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 17524121 - 17524398
Alignment:
| Q |
16 |
aaagaaccaatcattgagttgttcatgcatgacattcttggaggaagtaacccaacggctcgaccagtgaccggtttgctcggcaacatatatagtggtc |
115 |
Q |
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| T |
17524121 |
aaagaaccaatcattgagttgttcatgcatgacattcttggtggcagtaacccaacggctcgaccagtgaccggtttgctcggcaacatatacagtggtc |
17524220 |
T |
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| Q |
116 |
aagtaccctttgcaaccccagttggtttcaacactccaagtgatagtatccctatccctaatgcaaatggtgctaatcctactgttaatggtgttactgg |
215 |
Q |
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| T |
17524221 |
aagtaccatttgcaaccccagttggattcaacattccaactgatagtatgccaatccctaatgcaaatggtgctaatcctactgttaatggtgttactgg |
17524320 |
T |
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| Q |
216 |
tatccctttaggaactggtttagctggtacttcgtttgcaccaaacaacaacaataacaatcaaaacaatgttcagtt |
293 |
Q |
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| T |
17524321 |
tatccctttaggaactggtttagccggtacttcgtttgcaccaaacaacaacaataacaatcagaacaatgttcagtt |
17524398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 17527264 - 17527519
Alignment:
| Q |
15 |
gaaagaaccaatcattgagttgttcatgcatgacattcttggaggaagtaacccaacggctcgaccagtgaccggtttgctcggcaacatatatagtggt |
114 |
Q |
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| T |
17527264 |
gaaagaaccaatcattgagttgttcatgcatgacattcttggtggaagtaacccaacggctcgacccgtaactggtttgttgggcaacatatacagtggc |
17527363 |
T |
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| Q |
115 |
caagtaccctttgcaaccccagttggtttcaacactccaagtgatagtatccctatccctaatgcaaatggtgctaatcctactgttaatggtgttactg |
214 |
Q |
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| T |
17527364 |
caagtgccctttgcaaccccaataggattcaacactccacaaggtgggattcccatccctaatgcaaatggtgctattcccactgtcaatggcgttaccg |
17527463 |
T |
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| Q |
215 |
gtatccctttaggaactggtttagctggtacttcgtttgcaccaaacaacaacaat |
270 |
Q |
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| T |
17527464 |
gtatcccattaggaactggcttggctggtacttcctttgcaccaaataacaacaat |
17527519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 17659330 - 17659075
Alignment:
| Q |
15 |
gaaagaaccaatcattgagttgttcatgcatgacattcttggaggaagtaacccaacggctcgaccagtgaccggtttgctcggcaacatatatagtggt |
114 |
Q |
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| T |
17659330 |
gaaagaaccaatcattgagttgttcatgcatgacattcttggtggaagtaacccaacggctcgacctgtaactggtttgttgggcaacatatacagtggc |
17659231 |
T |
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| Q |
115 |
caagtaccctttgcaaccccagttggtttcaacactccaagtgatagtatccctatccctaatgcaaatggtgctaatcctactgttaatggtgttactg |
214 |
Q |
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| T |
17659230 |
caagttccctttgcaaccccaataggattcaacactccacaaggtgggattcccatccctaatgccaatggtgctattcccactgttaatggcgttaccg |
17659131 |
T |
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| Q |
215 |
gtatccctttaggaactggtttagctggtacttcgtttgcaccaaacaacaacaat |
270 |
Q |
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| T |
17659130 |
gtatcctattaggaactggcttggccggtacttcctttgcaccaaacagcaacaat |
17659075 |
T |
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