View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19073_low_26 (Length: 273)
Name: NF19073_low_26
Description: NF19073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19073_low_26 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 28260673 - 28260934
Alignment:
| Q |
13 |
ataatgtccatatatcaaattaaccatgaagtccaaggaactgtgactttgaatatagtgtccaattcacaggttttagcaaaaagactatgatacctat |
112 |
Q |
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| T |
28260673 |
ataatgtccatatatcaaattaaccatgaagtccaaggaactgtgactttgaatatagtgtcaaattcacaggttttagcaaaaagactatggtacctat |
28260772 |
T |
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| Q |
113 |
agtttagtagttgtcacacttttcagtcacatgaattccggc-nnnnnnnntatggtacagaaaattagctttgagattttgtggttgagctcttaaatt |
211 |
Q |
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| T |
28260773 |
agtttagtagttgtcacacttttcagtcacatgaattccggcaaaaaaaaatatggtacagaaaattagctttgagattttgtggttgagctcttaaatt |
28260872 |
T |
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| Q |
212 |
aaacccttttcaaatagtgnnnnnnngcacttgtatataagttttcttatatctcctacttt |
273 |
Q |
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| T |
28260873 |
aaacccttttcaaatagtgtttttttgcacttgtatataagttttcttatatctcctacttt |
28260934 |
T |
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